RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 ZNF219Q9P2Y4 722 aaPredicted RBP15.68■□□□□ 0.1
CNOT3-210ENST00000618939 SAP30BPQ9UHR5 308 aaKnown RBP15.68■□□□□ 0.1
CNOT3-210ENST00000618939 ZNF215Q9UL58 517 aaPredicted RBP15.68■□□□□ 0.1
CNOT3-210ENST00000618939 PCDHA5Q9Y5H7 936 aa15.68■□□□□ 0.1
CNOT3-210ENST00000618939 RPAP1Q9BWH6 1393 aaPredicted RBP15.68■□□□□ 0.1
CNOT3-210ENST00000618939 IL6STP40189 918 aaPredicted RBP15.68■□□□□ 0.1
CNOT3-210ENST00000618939 RFX7Q2KHR2 1363 aa15.68■□□□□ 0.1
CNOT3-210ENST00000618939 NOP2P46087 812 aaKnown RBP15.68■□□□□ 0.1
CNOT3-210ENST00000618939 SPAG5Q96R06 1193 aa15.68■□□□□ 0.1
CNOT3-210ENST00000618939 PPP6R2O75170 966 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 TRIM14Q14142 442 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 TNIP1Q15025 636 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 ERMNQ8TAM6 284 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 TRERF1Q96PN7 1200 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 ZSCAN10Q96SZ4 725 aaPredicted RBP15.67■□□□□ 0.1
CNOT3-210ENST00000618939 RHOXF2BP0C7M4 288 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 CHRNDQ07001 517 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 FAM47AQ5JRC9 791 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 RHOXF2Q9BQY4 288 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 CCDC24Q8N4L8 307 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 WDR66Q8TBY9 1149 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 TTF2Q9UNY4 1162 aaKnown RBP15.67■□□□□ 0.1
CNOT3-210ENST00000618939 TMCO5BA8MYB1 307 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 RPS8P62241 208 aaKnown RBP15.67■□□□□ 0.1
CNOT3-210ENST00000618939 TBC1D8BQ0IIM8 1120 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 TSGA10IPQ3SY00 556 aa15.67■□□□□ 0.1
CNOT3-210ENST00000618939 ADKP55263 362 aaKnown RBP15.66■□□□□ 0.1
CNOT3-210ENST00000618939 ETF1P62495 437 aaKnown RBP15.66■□□□□ 0.1
CNOT3-210ENST00000618939 HLTFQ14527 1009 aaKnown RBP eCLIP15.66■□□□□ 0.1
CNOT3-210ENST00000618939 CCDC122Q5T0U0 273 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 CEMIPQ8WUJ3 1361 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 TAB2Q9NYJ8 693 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 SHTN1A0MZ66 631 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 SH2B2O14492 632 aaPredicted RBP15.66■□□□□ 0.1
CNOT3-210ENST00000618939 TBCAO75347 108 aaKnown RBP15.66■□□□□ 0.1
CNOT3-210ENST00000618939 KRT9P35527 623 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 TFAP4Q01664 338 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 PDE4DQ08499 809 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 TRIML1Q8N9V2 468 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 TIGD1Q96MW7 591 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 ALDH8A1Q9H2A2 487 aaPredicted RBP15.66■□□□□ 0.1
CNOT3-210ENST00000618939 TTLL11Q8NHH1 800 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 ZC3H12CQ9C0D7 883 aaKnown RBP15.66■□□□□ 0.1
CNOT3-210ENST00000618939 SPATA31A3Q5VYP0 1347 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 CNBD1Q8NA66 436 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 CAPZA3Q96KX2 299 aa15.66■□□□□ 0.1
CNOT3-210ENST00000618939 TOM1O60784 492 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 RABL6Q3YEC7 729 aaPredicted RBP15.65■□□□□ 0.1
CNOT3-210ENST00000618939 TMTC1Q8IUR5 882 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 PIGBQ92521 554 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 AIFM3Q96NN9 605 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 BLZF1Q9H2G9 400 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 TUBBP07437 444 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 PPP1R2P41236 205 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 CYP26C1Q6V0L0 522 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 CSGALNACT2Q8N6G5 542 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 RDXP35241 583 aaKnown RBP15.65■□□□□ 0.1
CNOT3-210ENST00000618939 SV2BQ7L1I2 683 aa15.65■□□□□ 0.1
CNOT3-210ENST00000618939 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.65■□□□□ 0.1
CNOT3-210ENST00000618939 NAPGQ99747 312 aaPredicted RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 PIH1D3Q9NQM4 214 aaKnown RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 SEC31BQ9NQW1 1179 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 ARPP21Q9UBL0 812 aaPredicted RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 CCNL1Q9UK58 526 aaPredicted RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 IKBKBO14920 756 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 MCAMP43121 646 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 TMEM132AQ24JP5 1023 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 ZNF622Q969S3 477 aaKnown RBP eCLIP15.64■□□□□ 0.091e-6■■□□□ 11.5
CNOT3-210ENST00000618939 EHMT1Q9H9B1 1298 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 CEP170BQ9Y4F5 1589 aaPredicted RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 PSDA5PKW4 1024 aaPredicted RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 UFL1O94874 794 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 FMNL1O95466 1100 aaPredicted RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 ARID4AP29374 1257 aaPredicted RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 CHMP4BP1P59074 171 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 TRAPPC3LQ5T215 181 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 NEK11Q8NG66 645 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 NOC4LQ9BVI4 516 aaKnown RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 KIF20BQ96Q89 1820 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 LOC102724428A0A0B4J2F2 783 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 SIK1P57059 783 aa15.64■□□□□ 0.09
CNOT3-210ENST00000618939 FOXP1Q9H334 677 aaPredicted RBP15.64■□□□□ 0.09
CNOT3-210ENST00000618939 SPATA31D1Q6ZQQ2 1576 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 IFNAR1P17181 557 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 ERCC6LQ2NKX8 1250 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 STXBP4Q6ZWJ1 553 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 NELFBQ8WX92 580 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 GJB4Q9NTQ9 266 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 ZSWIM5Q9P217 1185 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 PRKAB2O43741 272 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 NONOQ15233 471 aaKnown RBP eCLIP15.63■□□□□ 0.092e-6■■■■□ 24
CNOT3-210ENST00000618939 DIP2AQ14689 1571 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 CCNT1O60563 726 aaKnown RBP15.63■□□□□ 0.09
CNOT3-210ENST00000618939 CRKLP46109 303 aaKnown RBP15.63■□□□□ 0.09
CNOT3-210ENST00000618939 CETN1Q12798 172 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 SALL3Q9BXA9 1300 aa15.63■□□□□ 0.09
CNOT3-210ENST00000618939 NBPF26B4DH59 902 aa15.62■□□□□ 0.09
CNOT3-210ENST00000618939 NBPF14Q5TI25 921 aa15.62■□□□□ 0.09
CNOT3-210ENST00000618939 NBPF10Q6P3W6 841 aaKnown RBP15.62■□□□□ 0.09
CNOT3-210ENST00000618939 NBPF15Q8N660 670 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms