RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 PDE4AP27815 886 aa20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 TDO2P48775 406 aa20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 SBK1Q52WX2 424 aa20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 CTR9Q6PD62 1173 aa20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 PRRT2Q7Z6L0 340 aaPredicted RBP20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 SEC62Q99442 399 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 WDR18Q9BV38 432 aa20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 ZBTB21Q9ULJ3 1066 aa20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 FOCADQ5VW36 1801 aa20.68■□□□□ 0.9
SHKBP1-212ENST00000596163 TRIM75PA6NK02 468 aa20.67■□□□□ 0.9
SHKBP1-212ENST00000596163 BTBD19C9JJ37 291 aa20.67■□□□□ 0.9
SHKBP1-212ENST00000596163 CYP2D6P10635 497 aa20.67■□□□□ 0.9
SHKBP1-212ENST00000596163 SPP2Q13103 211 aa20.67■□□□□ 0.9
SHKBP1-212ENST00000596163 TAF1CQ15572 869 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-212ENST00000596163 ABCB5Q2M3G0 1257 aa20.67■□□□□ 0.9
SHKBP1-212ENST00000596163 MCMDC2Q4G0Z9 681 aa20.67■□□□□ 0.9
SHKBP1-212ENST00000596163 MYH7P12883 1935 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 GPR25O00155 361 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 GH2P01242 217 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 SDSP20132 328 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 SHMT1P34896 483 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 MFAP1P55081 439 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 COL13A1Q5TAT6 717 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 GADL1Q6ZQY3 521 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 IFNL3Q8IZI9 196 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 FAM43AQ8N2R8 423 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 CCDC136Q96JN2 1154 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 ZNF287Q9HBT7 754 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 CDK5RAP2Q96SN8 1893 aa20.66■□□□□ 0.9
SHKBP1-212ENST00000596163 MINDY4BA8MYZ0 360 aa20.65■□□□□ 0.9
SHKBP1-212ENST00000596163 CRHR2Q13324 411 aa20.65■□□□□ 0.9
SHKBP1-212ENST00000596163 TTC22Q5TAA0 569 aa20.65■□□□□ 0.9
SHKBP1-212ENST00000596163 CCDC84Q86UT8 332 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-212ENST00000596163 CCDC17Q96LX7 622 aa20.65■□□□□ 0.9
SHKBP1-212ENST00000596163 NAPBQ9H115 298 aa20.65■□□□□ 0.9
SHKBP1-212ENST00000596163 DIAPH3Q9NSV4 1193 aa20.65■□□□□ 0.9
SHKBP1-212ENST00000596163 MYH1P12882 1939 aa20.65■□□□□ 0.9
SHKBP1-212ENST00000596163 C19orf81C9J6K1 198 aa20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 PDHXO00330 501 aa20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 MPHOSPH10O00566 681 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 FKTNO75072 461 aa20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 SLC3A2P08195 630 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 CDK8P49336 464 aa20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 NMIQ13287 307 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 C16orf86Q6ZW13 317 aa20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 PROCA1Q8NCQ7 364 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 DYNLL2Q96FJ2 89 aa20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 SLC45A1Q9Y2W3 748 aa20.64■□□□□ 0.89
SHKBP1-212ENST00000596163 CYP2D7A0A087X1C5 515 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 USP17L10C9JJH3 530 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 BACE1P56817 501 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 JAG1P78504 1218 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 PABPC4Q13310 644 aaKnown RBP eCLIP20.63■□□□□ 0.891e-9■■■■□ 22.8
SHKBP1-212ENST00000596163 MOGSQ13724 837 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 RAB3GAP1Q15042 981 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 SH3D19Q5HYK7 790 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 ZNF296Q8WUU4 475 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 FAM227BQ96M60 508 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 TMOD4Q9NZQ9 345 aa20.63■□□□□ 0.89
SHKBP1-212ENST00000596163 DOCK1Q14185 1865 aa20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 ERICH6BQ5W0A0 696 aa20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 GPAT2Q6NUI2 795 aa20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 CCDC129Q6ZRS4 1044 aa20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 TMEM179Q6ZVK1 233 aa20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 PARK7Q99497 189 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 MKNK2Q9HBH9 465 aa20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 EPB41L4AQ9HCS5 686 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 NAV1Q8NEY1 1877 aa20.62■□□□□ 0.89
SHKBP1-212ENST00000596163 A0A0D9SFI3 127 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 TLR2O60603 784 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 USP14P54578 494 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 HMGCS2P54868 508 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 EVX2Q03828 476 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 TNS4Q8IZW8 715 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 SLC44A5Q8NCS7 719 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 R3HDMLQ9H3Y0 253 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 PNMA3Q9UL41 463 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 AGTPBP1Q9UPW5 1226 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 SIPA1L1O43166 1804 aa20.61■□□□□ 0.89
SHKBP1-212ENST00000596163 LAMB1P07942 1786 aa20.6■□□□□ 0.89
SHKBP1-212ENST00000596163 MTMR2Q13614 643 aa20.6■□□□□ 0.89
SHKBP1-212ENST00000596163 ARHGEF6Q15052 776 aa20.6■□□□□ 0.89
SHKBP1-212ENST00000596163 ALX1Q15699 326 aa20.6■□□□□ 0.89
SHKBP1-212ENST00000596163 USP17L2Q6R6M4 530 aa20.6■□□□□ 0.89
SHKBP1-212ENST00000596163 ERO1AQ96HE7 468 aa20.6■□□□□ 0.89
SHKBP1-212ENST00000596163 FEZ1Q99689 392 aa20.6■□□□□ 0.89
SHKBP1-212ENST00000596163 CCDC171Q6TFL3 1326 aa20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 DDX60LQ5H9U9 1706 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 GSPT1P15170 499 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 OSBPP22059 807 aa20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 SP3Q02447 781 aa20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 PDE4BQ07343 736 aa20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 SEPT2Q15019 361 aa20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 SHROOM1Q2M3G4 852 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 CWC27Q6UX04 472 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 ZNF444Q8N0Y2 327 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-212ENST00000596163 PPARAQ07869 468 aa20.58■□□□□ 0.89
SHKBP1-212ENST00000596163 RUFY2Q8WXA3 655 aa20.58■□□□□ 0.89
SHKBP1-212ENST00000596163 SH2D4AQ9H788 454 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms