RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	ENGASE	Q8NFI3	743 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	L2HGDH	Q9H9P8	463 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	SUGCT	Q9HAC7	445 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	SAR1B	Q9Y6B6	198 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	RIMS1	Q86UR5	1692 aa	Known RBP	12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	PSMA7	O14818	248 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	RNF40	O75150	1001 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	KRT18	P05783	430 aa	Known RBP	12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	MRPS25	P82663	173 aa	Known RBP	12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	TBC1D8B	Q0IIM8	1120 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	NR5A1	Q13285	461 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	CT47A1	Q5JQC4	288 aa	Predicted RBP	12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	CCDC113	Q9H0I3	377 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	ARMT1	Q9H993	441 aa		12.86	□□□□□ -0.35
CLN3-238	ENST00000569430	ADAMTS13	Q76LX8	1427 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	CTDNEP1	O95476	244 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	RBM43	Q6ZSC3	357 aa	Known RBP	12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	TTLL7	Q6ZT98	887 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	PLBD2	Q8NHP8	589 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	KIF28P	B7ZC32	967 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	HPD	P32754	393 aa	Predicted RBP	12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	ATP1A2	P50993	1020 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	IFIT1B	Q5T764	474 aa	Known RBP	12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	FAM71B	Q8TC56	605 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	DLC1	Q96QB1	1528 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	JAKMIP2	Q96AA8	810 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	TMEM87B	Q96K49	555 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	CNNM2	Q9H8M5	875 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	PARP3	Q9Y6F1	533 aa		12.85	□□□□□ -0.35
CLN3-238	ENST00000569430	TEX33	O43247	280 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	NOP2	P46087	812 aa	Known RBP	12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	WHAMMP3	Q1A5X7	153 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	APOA5	Q6Q788	366 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	ANKRD18A	Q8IVF6	992 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	PUS7L	Q9H0K6	701 aa	Known RBP	12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	RMND1	Q9NWS8	449 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	TMCO5B	A8MYB1	307 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	SLC5A1	P13866	664 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	KRT2	P35908	639 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	IFFO1	Q0D2I5	559 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	ANKLE2	Q86XL3	938 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	TICAM2	Q86XR7	235 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	SAMM50	Q9Y512	469 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	ZNF532	Q9HCE3	1301 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	CYP7A1	P22680	504 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	GNGT1	P63211	74 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	TUBB2A	Q13885	445 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	CFAP58	Q5T655	872 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	ESR2	Q92731	530 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	TUBB2B	Q9BVA1	445 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	NAA15	Q9BXJ9	866 aa	Known RBP	12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	SLC52A2	Q9HAB3	445 aa		12.84	□□□□□ -0.35
CLN3-238	ENST00000569430	EIF3CL	B5ME19	914 aa	Known RBP	12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	TBC1D8	O95759	1140 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	PLCD1	P51178	756 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	VAV2	P52735	878 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	ASIC1	P78348	528 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	PAK1	Q13153	545 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	SPATA1	Q5VX52	437 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	EIF3C	Q99613	913 aa	Known RBP	12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	CSRNP2	Q9H175	543 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	EPN1	Q9Y6I3	576 aa	Predicted RBP	12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	DEXI	O95424	95 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	TSGA10IP	Q3SY00	556 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	SOGA3	Q5TF21	947 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	SHC4	Q6S5L8	630 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	CCDC91	Q7Z6B0	441 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	TMTC2	Q8N394	836 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	NELFB	Q8WX92	580 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	VAT1L	Q9HCJ6	419 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	GOPC	Q9HD26	462 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	INCENP	Q9NQS7	918 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	MRFAP1	Q9Y605	127 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	ZPR1	O75312	459 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	STARD3NL	O95772	234 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	KCTD16	Q68DU8	428 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	GBP6	Q6ZN66	633 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	PIK3AP1	Q6ZUJ8	805 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	TCP11L1	Q9NUJ3	509 aa		12.83	□□□□□ -0.36
CLN3-238	ENST00000569430	KIF20B	Q96Q89	1820 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	ZMYM6	O95789	1325 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	USP42	Q9H9J4	1324 aa	Known RBP	12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	N4BP1	O75113	896 aa	Known RBP	12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	PPP6R2	O75170	966 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	OR8K1	Q8NGG5	319 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	MED4	Q9NPJ6	270 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	SEPT11	Q9NVA2	429 aa	Known RBP	12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	CAPN7	Q9Y6W3	813 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	IGHMBP2	P38935	993 aa	Known RBP	12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	USP5	P45974	858 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	ENOX1	Q8TC92	643 aa	Known RBP	12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	CCDC114	Q96M63	670 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	SCLT1	Q96NL6	688 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	EXOC1	Q9NV70	894 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	TSPY2	A6NKD2	308 aa		12.82	□□□□□ -0.36
CLN3-238	ENST00000569430	FDPS	P14324	419 aa	Known RBP	12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms