RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CCDC136Q96JN2 1154 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 CABP5Q9NP86 173 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 HELLSQ9NRZ9 838 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 ZBTB21Q9ULJ3 1066 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 ROBO3Q96MS0 1386 aa15.54■□□□□ 0.08
CLK3-224ENST00000568605 GDF11O95390 407 aa15.54■□□□□ 0.08
CLK3-224ENST00000568605 PLCD1P51178 756 aa15.54■□□□□ 0.08
CLK3-224ENST00000568605 CERKLQ49MI3 558 aaPredicted RBP15.54■□□□□ 0.08
CLK3-224ENST00000568605 NOM1Q5C9Z4 860 aaKnown RBP15.54■□□□□ 0.08
CLK3-224ENST00000568605 TATDN1Q6P1N9 297 aa15.54■□□□□ 0.08
CLK3-224ENST00000568605 FASTKD5Q7L8L6 764 aaKnown RBP15.54■□□□□ 0.08
CLK3-224ENST00000568605 DIAPH3Q9NSV4 1193 aa15.54■□□□□ 0.08
CLK3-224ENST00000568605 AFG3L2Q9Y4W6 797 aa15.54■□□□□ 0.08
CLK3-224ENST00000568605 A0A0G2JLL6 359 aaPredicted RBP15.53■□□□□ 0.08
CLK3-224ENST00000568605 TRIM75PA6NK02 468 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 USP17L12C9JPN9 530 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 USP17L21D6R901 530 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 PDE4AP27815 886 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 GABPAQ06546 454 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 TAF1CQ15572 869 aaPredicted RBP15.53■□□□□ 0.08
CLK3-224ENST00000568605 ABCB5Q2M3G0 1257 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 SBK1Q52WX2 424 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 TTC22Q5TAA0 569 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 C12orf60Q5U649 245 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 PRRT2Q7Z6L0 340 aaPredicted RBP15.53■□□□□ 0.08
CLK3-224ENST00000568605 ZNF280CQ8ND82 737 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 SEC62Q99442 399 aaKnown RBP15.53■□□□□ 0.08
CLK3-224ENST00000568605 NAPBQ9H115 298 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 ZNF287Q9HBT7 754 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 ZFYVE28Q9HCC9 887 aa15.53■□□□□ 0.08
CLK3-224ENST00000568605 ZSWIM8A7E2V4 1837 aa15.52■□□□□ 0.08
CLK3-224ENST00000568605 GSG1L2A8MUP6 293 aa15.52■□□□□ 0.08
CLK3-224ENST00000568605 PATL2C9JE40 543 aaKnown RBP15.52■□□□□ 0.08
CLK3-224ENST00000568605 SLC3A2P08195 630 aaKnown RBP15.52■□□□□ 0.08
CLK3-224ENST00000568605 SHMT1P34896 483 aa15.52■□□□□ 0.08
CLK3-224ENST00000568605 MCMDC2Q4G0Z9 681 aa15.52■□□□□ 0.08
CLK3-224ENST00000568605 ANKRD23Q86SG2 305 aa15.52■□□□□ 0.08
CLK3-224ENST00000568605 PROCA1Q8NCQ7 364 aaPredicted RBP15.52■□□□□ 0.08
CLK3-224ENST00000568605 CCDC171Q6TFL3 1326 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 A0A0D9SFI3 127 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 TBC1D8O95759 1140 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 GH2P01242 217 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 CYP2D6P10635 497 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 SDSP20132 328 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 NMIQ13287 307 aaPredicted RBP15.51■□□□□ 0.07
CLK3-224ENST00000568605 PABPC4Q13310 644 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLK3-224ENST00000568605 CRHR2Q13324 411 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 CTR9Q6PD62 1173 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 GADL1Q6ZQY3 521 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 C16orf86Q6ZW13 317 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 FAM43AQ8N2R8 423 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 PARK7Q99497 189 aaKnown RBP15.51■□□□□ 0.07
CLK3-224ENST00000568605 PTPN18Q99952 460 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 WDR18Q9BV38 432 aa15.51■□□□□ 0.07
CLK3-224ENST00000568605 EPB41L4AQ9HCS5 686 aaPredicted RBP15.51■□□□□ 0.07
CLK3-224ENST00000568605 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.51■□□□□ 0.07
CLK3-224ENST00000568605 COL11A1P12107 1806 aaPredicted RBP15.51■□□□□ 0.07
CLK3-224ENST00000568605 MINDY4BA8MYZ0 360 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 BTBD19C9JJ37 291 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 MPHOSPH10O00566 681 aaKnown RBP15.5■□□□□ 0.07
CLK3-224ENST00000568605 SPP2Q13103 211 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 RRP1BQ14684 758 aaKnown RBP15.5■□□□□ 0.07
CLK3-224ENST00000568605 RAB3GAP1Q15042 981 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 ERICH6BQ5W0A0 696 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 TMEM179Q6ZVK1 233 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 CCDC84Q86UT8 332 aaPredicted RBP15.5■□□□□ 0.07
CLK3-224ENST00000568605 IFNL3Q8IZI9 196 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 CCDC17Q96LX7 622 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 FEZ1Q99689 392 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 TMOD4Q9NZQ9 345 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 PNMA3Q9UL41 463 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 SLC45A1Q9Y2W3 748 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 A0A0G2JMZ2 1700 aa15.5■□□□□ 0.07
CLK3-224ENST00000568605 ZMYM6O95789 1325 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 RAD50Q92878 1312 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 CYP2D7A0A087X1C5 515 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 C19orf81C9J6K1 198 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 USP17L10C9JJH3 530 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 GPR25O00155 361 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 PDHXO00330 501 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 USP14P54578 494 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 MTMR2Q13614 643 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 CCDC129Q6ZRS4 1044 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 SLC44A5Q8NCS7 719 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 FAM227BQ96M60 508 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 SH2D4AQ9H788 454 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 AGTPBP1Q9UPW5 1226 aa15.49■□□□□ 0.07
CLK3-224ENST00000568605 FKTNO75072 461 aa15.48■□□□□ 0.07
CLK3-224ENST00000568605 GSPT1P15170 499 aaKnown RBP15.48■□□□□ 0.07
CLK3-224ENST00000568605 CDK8P49336 464 aa15.48■□□□□ 0.07
CLK3-224ENST00000568605 HMGCS2P54868 508 aa15.48■□□□□ 0.07
CLK3-224ENST00000568605 BACE1P56817 501 aa15.48■□□□□ 0.07
CLK3-224ENST00000568605 PDE4BQ07343 736 aa15.48■□□□□ 0.07
CLK3-224ENST00000568605 CWC27Q6UX04 472 aaKnown RBP15.48■□□□□ 0.07
CLK3-224ENST00000568605 DYNLL2Q96FJ2 89 aa15.48■□□□□ 0.07
CLK3-224ENST00000568605 MKNK2Q9HBH9 465 aa15.48■□□□□ 0.07
CLK3-224ENST00000568605 RLFQ13129 1914 aa15.47■□□□□ 0.07
CLK3-224ENST00000568605 PPARAQ07869 468 aa15.47■□□□□ 0.07
CLK3-224ENST00000568605 SH3D19Q5HYK7 790 aa15.47■□□□□ 0.07
CLK3-224ENST00000568605 COL13A1Q5TAT6 717 aaPredicted RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms