RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ZNF18P17022 549 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 BMP6P22004 513 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 ETF1P62495 437 aaKnown RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 DMTNQ08495 405 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 CCDC93Q567U6 631 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 SPATA20Q8TB22 786 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 AATFQ9NY61 560 aaKnown RBP eCLIP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 SERTAD1Q9UHV2 236 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 DDX41Q9UJV9 622 aaKnown RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 PCDHB6Q9Y5E3 794 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 DUOX1Q9NRD9 1551 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 GOLGA6L9A6NEM1 432 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 RGL2O15211 777 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 POLR2DO15514 142 aaKnown RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 ARHGAP6O43182 974 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 PRPF3O43395 683 aaKnown RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 ACTN4O43707 911 aaKnown RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 FGRP09769 529 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 ERCC5P28715 1186 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 PDE4BQ07343 736 aa15.44■□□□□ 0.06
SHMT2-222ENST00000555774 TBX2Q13207 712 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 TMED8Q6PL24 325 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 ZSCAN10Q96SZ4 725 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 RIOK1Q9BRS2 568 aaKnown RBP15.44■□□□□ 0.06
SHMT2-222ENST00000555774 TRIM75PA6NK02 468 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 ZSCAN20P17040 1043 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-222ENST00000555774 KRT2P35908 639 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 DDB1Q16531 1140 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 CLEC4GQ6UXB4 293 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 SYT10Q6XYQ8 523 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 NUTM2AQ8IVF1 878 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-222ENST00000555774 SRRTQ9BXP5 876 aaKnown RBP15.43■□□□□ 0.06
SHMT2-222ENST00000555774 RAI14Q9P0K7 980 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 TAOK2Q9UL54 1235 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 SEMA3EO15041 775 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 FOXN1O15353 648 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 DDAH1O94760 285 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 NR5A1Q13285 461 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 NAA30Q147X3 362 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-222ENST00000555774 SF3B3Q15393 1217 aaKnown RBP15.43■□□□□ 0.06
SHMT2-222ENST00000555774 CATIPQ7Z7H3 387 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 ANKRD18AQ8IVF6 992 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 PHF20Q9BVI0 1012 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 BRMS1Q9HCU9 246 aa15.43■□□□□ 0.06
SHMT2-222ENST00000555774 MINDY4BA8MYZ0 360 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 PLCD1P51178 756 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 GRIN1Q05586 938 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 ADGRA1Q86SQ6 560 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 HOMER1Q86YM7 354 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 FERMT2Q96AC1 680 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 BCL11BQ9C0K0 894 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-222ENST00000555774 CABP5Q9NP86 173 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 BSDC1Q9NW68 430 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-222ENST00000555774 PDS5AQ29RF7 1337 aaKnown RBP15.42■□□□□ 0.06
SHMT2-222ENST00000555774 SPATA31A1Q5TZJ5 1347 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 SPDYE4A6NLX3 237 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 PRR29P0C7W0 189 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 FUT2Q10981 343 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 ITPK1Q13572 414 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 CAVIN4Q5BKX8 364 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 SPECC1Q5M775 1068 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 IQCA1Q86XH1 822 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 OXER1Q8TDS5 423 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 SDR42E1Q8WUS8 393 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 SMARCC1Q92922 1105 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-222ENST00000555774 CSRNP2Q9H175 543 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 INTS13Q9NVM9 706 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 NFE2L3Q9Y4A8 694 aa15.42■□□□□ 0.06
SHMT2-222ENST00000555774 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.42■□□□□ 0.06
SHMT2-222ENST00000555774 TMEM232C9JQI7 657 aa15.41■□□□□ 0.06
SHMT2-222ENST00000555774 PKN1Q16512 942 aa15.41■□□□□ 0.06
SHMT2-222ENST00000555774 IFIT1BQ5T764 474 aaKnown RBP15.41■□□□□ 0.06
SHMT2-222ENST00000555774 SPECC1LQ69YQ0 1117 aa15.41■□□□□ 0.06
SHMT2-222ENST00000555774 TMEM139Q8IV31 216 aa15.41■□□□□ 0.06
SHMT2-222ENST00000555774 ENAHQ8N8S7 591 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-222ENST00000555774 ABCF2Q9UG63 623 aa15.41■□□□□ 0.06
SHMT2-222ENST00000555774 COL1A1P02452 1464 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-222ENST00000555774 A0A1B0GUL6 1792 aa15.41■□□□□ 0.06
SHMT2-222ENST00000555774 CACNA1SQ13698 1873 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 STX10O60499 249 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 CDK11BP21127 795 aaKnown RBP15.4■□□□□ 0.06
SHMT2-222ENST00000555774 ELF2Q15723 593 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 REXO1L1PQ8IX06 675 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 SCN7AQ01118 1682 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 DLEC1Q9Y238 1755 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 ZNF831Q5JPB2 1677 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 NT5C2P49902 561 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 FMR1Q06787 632 aaKnown RBP eCLIP15.4■□□□□ 0.062e-11■■■■□ 22.1
SHMT2-222ENST00000555774 KMT5BQ4FZB7 885 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 SH3RF1Q7Z6J0 888 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 CMTR1Q8N1G2 835 aaKnown RBP15.4■□□□□ 0.06
SHMT2-222ENST00000555774 CCDC82Q8N4S0 544 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 PRDM4Q9UKN5 801 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 NRAPQ86VF7 1730 aa15.4■□□□□ 0.06
SHMT2-222ENST00000555774 SLFN14P0C7P3 912 aa15.39■□□□□ 0.05
SHMT2-222ENST00000555774 TRIM65Q6PJ69 517 aa15.39■□□□□ 0.05
SHMT2-222ENST00000555774 BAG1Q99933 345 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-222ENST00000555774 PYM1Q9BRP8 204 aaKnown RBP15.39■□□□□ 0.05
SHMT2-222ENST00000555774 ZBTB22O15209 634 aa15.39■□□□□ 0.05
SHMT2-222ENST00000555774 ORC4O43929 436 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms