RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 JAG2Q9Y219 1238 aa21.36■■□□□ 1.01
PRPF40B-208ENST00000548436 FUT2Q10981 343 aa21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 PPP2R5BQ15173 497 aa21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 ISM2Q6H9L7 571 aa21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 KRI1Q8N9T8 703 aaKnown RBP21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 TUBE1Q9UJT0 475 aa21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 PCP11498 1178 aaKnown RBP21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 PKN1Q16512 942 aa21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 IQCA1Q86XH1 822 aa21.35■■□□□ 1.01
PRPF40B-208ENST00000548436 GRIN1Q05586 938 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 PNOCQ13519 176 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 ARID5BQ14865 1188 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 LONRF3Q496Y0 759 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 RILPL1Q5EBL4 403 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 SPECC1Q5M775 1068 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 CATIPQ7Z7H3 387 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 CRNKL1Q9BZJ0 848 aaKnown RBP21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 KCNH3Q9ULD8 1083 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 PCDHB6Q9Y5E3 794 aa21.34■■□□□ 1.01
PRPF40B-208ENST00000548436 PLEKHA8P1O95397 391 aa21.33■■□□□ 1.01
PRPF40B-208ENST00000548436 TROAPQ12815 778 aa21.33■■□□□ 1.01
PRPF40B-208ENST00000548436 NCAPHQ15003 741 aa21.33■■□□□ 1.01
PRPF40B-208ENST00000548436 hCG_1642624A0A1W2PR95 340 aa21.33■■□□□ 1
PRPF40B-208ENST00000548436 NPHP1O15259 732 aa21.33■■□□□ 1
PRPF40B-208ENST00000548436 CYP2D6P10635 497 aa21.33■■□□□ 1
PRPF40B-208ENST00000548436 RFC4P35249 363 aa21.33■■□□□ 1
PRPF40B-208ENST00000548436 METTL16Q86W50 562 aaKnown RBP21.33■■□□□ 1
PRPF40B-208ENST00000548436 LRRC8AQ8IWT6 810 aa21.33■■□□□ 1
PRPF40B-208ENST00000548436 MYRIPQ8NFW9 859 aa21.33■■□□□ 1
PRPF40B-208ENST00000548436 PRIMPOLQ96LW4 560 aa21.33■■□□□ 1
PRPF40B-208ENST00000548436 FBXO2Q9UK22 296 aaPredicted RBP21.33■■□□□ 1
PRPF40B-208ENST00000548436 ORC4O43929 436 aa21.32■■□□□ 1
PRPF40B-208ENST00000548436 KRBA2Q6ZNG9 492 aa21.32■■□□□ 1
PRPF40B-208ENST00000548436 ATP8A2Q9NTI2 1148 aa21.32■■□□□ 1
PRPF40B-208ENST00000548436 VPS54Q9P1Q0 977 aa21.32■■□□□ 1
PRPF40B-208ENST00000548436 BAZ2BQ9UIF8 2168 aaKnown RBP21.32■■□□□ 1
PRPF40B-208ENST00000548436 PRPF3O43395 683 aaKnown RBP21.32■■□□□ 1
PRPF40B-208ENST00000548436 NMT2O60551 498 aa21.32■■□□□ 1
PRPF40B-208ENST00000548436 PTPREP23469 700 aa21.32■■□□□ 1
PRPF40B-208ENST00000548436 AKAP17AQ02040 695 aaKnown RBP21.32■■□□□ 1
PRPF40B-208ENST00000548436 TRAPPC3LQ5T215 181 aa21.32■■□□□ 1
PRPF40B-208ENST00000548436 CABP5Q9NP86 173 aa21.32■■□□□ 1
PRPF40B-208ENST00000548436 NFIXQ14938 502 aa21.31■■□□□ 1
PRPF40B-208ENST00000548436 FAM47AQ5JRC9 791 aa21.31■■□□□ 1
PRPF40B-208ENST00000548436 FOXP4Q8IVH2 680 aaPredicted RBP21.31■■□□□ 1
PRPF40B-208ENST00000548436 RBM28Q9NW13 759 aaKnown RBP21.31■■□□□ 1
PRPF40B-208ENST00000548436 V9GY48 417 aaPredicted RBP21.31■■□□□ 1
PRPF40B-208ENST00000548436 DYNC1I1O14576 645 aa21.3■■□□□ 1
PRPF40B-208ENST00000548436 FAM196AQ6ZSG2 479 aa21.3■■□□□ 1
PRPF40B-208ENST00000548436 FILIP1Q7Z7B0 1213 aa21.3■■□□□ 1
PRPF40B-208ENST00000548436 CNNM3Q8NE01 707 aa21.3■■□□□ 1
PRPF40B-208ENST00000548436 PHF20Q9BVI0 1012 aa21.3■■□□□ 1
PRPF40B-208ENST00000548436 FAM205CA6NFA0 338 aa21.3■■□□□ 1
PRPF40B-208ENST00000548436 ATP2B1P20020 1258 aa21.3■■□□□ 1
PRPF40B-208ENST00000548436 ANKIB1Q9P2G1 1089 aa21.3■■□□□ 1
PRPF40B-208ENST00000548436 ZBTB22O15209 634 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 FOXN1O15353 648 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 DDAH1O94760 285 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 CALM1P0DP23 149 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 CALM2P0DP24 149 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 CALM3P0DP25 149 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 MDM2Q00987 491 aaPredicted RBP21.29■■□□□ 1
PRPF40B-208ENST00000548436 GRAPQ13588 217 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 SBK1Q52WX2 424 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 EARS2Q5JPH6 523 aaKnown RBP21.29■■□□□ 1
PRPF40B-208ENST00000548436 DZIP1Q86YF9 867 aaKnown RBP21.29■■□□□ 1
PRPF40B-208ENST00000548436 GRAPLQ8TC17 118 aaPredicted RBP21.29■■□□□ 1
PRPF40B-208ENST00000548436 HSD3B7Q9H2F3 369 aa21.29■■□□□ 1
PRPF40B-208ENST00000548436 ARPP21Q9UBL0 812 aaPredicted RBP21.29■■□□□ 1
PRPF40B-208ENST00000548436 SMTNL1A8MU46 457 aa21.28■■□□□ 1
PRPF40B-208ENST00000548436 RBM10P98175 930 aaKnown RBP21.28■■□□□ 1
PRPF40B-208ENST00000548436 TMTC3Q6ZXV5 915 aa21.28■■□□□ 1
PRPF40B-208ENST00000548436 XPO4Q9C0E2 1151 aaKnown RBP21.28■■□□□ 1
PRPF40B-208ENST00000548436 IFNKQ9P0W0 207 aa21.28■■□□□ 1
PRPF40B-208ENST00000548436 IKBKBO14920 756 aa21.28■■□□□ 1
PRPF40B-208ENST00000548436 XBP1P17861 261 aa21.28■■□□□ 1
PRPF40B-208ENST00000548436 SPTY2D1Q68D10 685 aaPredicted RBP21.28■■□□□ 1
PRPF40B-208ENST00000548436 LRRC4BQ9NT99 713 aa21.28■■□□□ 1
PRPF40B-208ENST00000548436 PCDHA5Q9Y5H7 936 aa21.28■■□□□ 1
PRPF40B-208ENST00000548436 SRPRBQ9Y5M8 271 aaKnown RBP21.28■■□□□ 1
PRPF40B-208ENST00000548436 USP17L8P0C7I0 530 aa21.27■■□□□ 1
PRPF40B-208ENST00000548436 KRT2P35908 639 aa21.27■■□□□ 1
PRPF40B-208ENST00000548436 SLC4A8Q2Y0W8 1093 aa21.27■■□□□ 1
PRPF40B-208ENST00000548436 SRBD1Q8N5C6 995 aaKnown RBP21.27■■□□□ 1
PRPF40B-208ENST00000548436 GJD4Q96KN9 370 aaPredicted RBP21.27■■□□□ 1
PRPF40B-208ENST00000548436 FAM13BQ9NYF5 915 aa21.27■■□□□ 1
PRPF40B-208ENST00000548436 CNTNAP5Q8WYK1 1306 aa21.27■■□□□ 1
PRPF40B-208ENST00000548436 NEMFO60524 1076 aa21.27■□□□□ 0.99
PRPF40B-208ENST00000548436 TMED8Q6PL24 325 aaPredicted RBP21.27■□□□□ 0.99
PRPF40B-208ENST00000548436 ELOA2Q8IYF1 753 aaPredicted RBP21.27■□□□□ 0.99
PRPF40B-208ENST00000548436 CNBD1Q8NA66 436 aa21.27■□□□□ 0.99
PRPF40B-208ENST00000548436 ZNF579Q8NAF0 562 aaKnown RBP21.27■□□□□ 0.99
PRPF40B-208ENST00000548436 MCM9Q9NXL9 1143 aa21.27■□□□□ 0.99
PRPF40B-208ENST00000548436 LEMD3Q9Y2U8 911 aa21.27■□□□□ 0.99
PRPF40B-208ENST00000548436 POLR2DO15514 142 aaKnown RBP21.26■□□□□ 0.99
PRPF40B-208ENST00000548436 RRP9O43818 475 aaKnown RBP21.26■□□□□ 0.99
PRPF40B-208ENST00000548436 SMC2O95347 1197 aa21.26■□□□□ 0.99
PRPF40B-208ENST00000548436 LMOD1P29536 600 aaPredicted RBP21.26■□□□□ 0.99
PRPF40B-208ENST00000548436 TPM4P67936 248 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms