RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PALD1Q9ULE6 856 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 PCDH11XQ9BZA7 1347 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 PCDH11YQ9BZA8 1340 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 TREHO43280 583 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 STX6O43752 255 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 GNAI3P08754 354 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 GDF10P55107 478 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 HSP90AA4PQ58FG1 418 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 PLA2G2CQ5R387 149 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 TTC22Q5TAA0 569 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 RPAP2Q8IXW5 612 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-203ENST00000547825 SMAP1Q8IYB5 467 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-203ENST00000547825 FZD6O60353 706 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 PHKG2P15735 406 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 PDCP20941 246 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 TAF7LQ5H9L4 462 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 TJAP1Q5JTD0 557 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 LUZP1Q86V48 1076 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 DUSP9Q99956 384 aaKnown RBP6.38□□□□□ -1.39
LIMA1-203ENST00000547825 USP26Q9BXU7 913 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 MYH3P11055 1940 aa6.38□□□□□ -1.39
LIMA1-203ENST00000547825 TIAM2Q8IVF5 1701 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 PTCD1O75127 700 aaKnown RBP6.37□□□□□ -1.39
LIMA1-203ENST00000547825 FAM193AP78312 1265 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 COX20Q5RI15 118 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 KIF18AQ8NI77 898 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 FAM163AQ96GL9 167 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-203ENST00000547825 PDLIM2Q96JY6 352 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 SLC4A9Q96Q91 983 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 PARP2Q9UGN5 583 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 GOLGB1Q14789 3259 aaKnown RBP6.37□□□□□ -1.39
LIMA1-203ENST00000547825 H0YHG0 523 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 SKOR1P84550 965 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 ARID5BQ14865 1188 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 STK38Q15208 465 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 TMCO3Q6UWJ1 677 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 NAT10Q9H0A0 1025 aaKnown RBP6.37□□□□□ -1.39
LIMA1-203ENST00000547825 IL16Q14005 1332 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 AP5Z1O43299 807 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 GJB2P29033 226 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 NFE2L2Q16236 605 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 DDB1Q16531 1140 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 LCE2DQ5TA82 110 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-203ENST00000547825 BLOC1S2Q6QNY1 142 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 LEKR1Q6ZMV7 388 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 NT5DC4Q86YG4 428 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 IPO4Q8TEX9 1081 aaKnown RBP6.37□□□□□ -1.39
LIMA1-203ENST00000547825 GTF3C6Q969F1 213 aa6.37□□□□□ -1.39
LIMA1-203ENST00000547825 TNFRSF10BO14763 440 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 KCNQ2O43526 872 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 PTPN5P54829 565 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 AXDND1Q5T1B0 1012 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-203ENST00000547825 CEP135Q66GS9 1140 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 GPATCH11Q8N954 259 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 RBCK1Q9BYM8 510 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 DACT1Q9NYF0 836 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 SALL3Q9BXA9 1300 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 RAB11FIP3O75154 756 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 ANO6Q4KMQ2 910 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 TIGD1Q96MW7 591 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 DNAJC25Q9H1X3 360 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 STRN4Q9NRL3 753 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 NPR3P17342 541 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 IGFBP4P22692 258 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 PSMA5P28066 241 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 TNNI2P48788 182 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 FMR1Q06787 632 aaKnown RBP eCLIP6.36□□□□□ -1.39
LIMA1-203ENST00000547825 EHHADHQ08426 723 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 EZH2Q15910 746 aaKnown RBP6.36□□□□□ -1.39
LIMA1-203ENST00000547825 CFAP100Q494V2 611 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 TOM1L2Q6ZVM7 507 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 G2E3Q7L622 706 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 METTL16Q86W50 562 aaKnown RBP6.36□□□□□ -1.39
LIMA1-203ENST00000547825 AMIGO3Q86WK7 504 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 NOL10Q9BSC4 688 aaKnown RBP6.36□□□□□ -1.39
LIMA1-203ENST00000547825 CWC15Q9P013 229 aaKnown RBP6.36□□□□□ -1.39
LIMA1-203ENST00000547825 LIMCH1Q9UPQ0 1083 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 LRRFIP2Q9Y608 721 aaKnown RBP6.36□□□□□ -1.39
LIMA1-203ENST00000547825 CCDC88AQ3V6T2 1871 aa6.36□□□□□ -1.39
LIMA1-203ENST00000547825 LDHBP07195 334 aaKnown RBP6.35□□□□□ -1.39
LIMA1-203ENST00000547825 SKILP12757 684 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 SFPQP23246 707 aaKnown RBP eCLIP6.35□□□□□ -1.39
LIMA1-203ENST00000547825 UBE2HP62256 183 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 VASH1Q7L8A9 365 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-203ENST00000547825 KRT222Q8N1A0 295 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 TMEM87AQ8NBN3 555 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 ZNF784Q8NCA9 323 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-203ENST00000547825 MYRIPQ8NFW9 859 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 BOLA2Q9H3K6 86 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 PCDH10Q9P2E7 1040 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 SNED1Q8TER0 1413 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 MYCP01106 439 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-203ENST00000547825 LMAN1P49257 510 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 ERVK-9P63128 1117 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 DSC3Q14574 896 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 HS1BP3Q53T59 392 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 FAM182BQ5T319 152 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 C16orf46Q6P387 395 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 AACSQ86V21 672 aa6.35□□□□□ -1.39
LIMA1-203ENST00000547825 CHMP4CQ96CF2 233 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms