RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 ZKSCAN5Q9Y2L8 839 aa18.14■□□□□ 0.5
PCDHA3-201ENST00000522353 XDHP47989 1333 aa18.14■□□□□ 0.5
PCDHA3-201ENST00000522353 EFCAB6Q5THR3 1501 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 SEL1L2Q5TEA6 688 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 ARHGEF25Q86VW2 580 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 FNBP4Q8N3X1 1017 aaPredicted RBP18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 CSGALNACT2Q8N6G5 542 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 LEMD3Q9Y2U8 911 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 RFX1P22670 979 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 DOK7Q18PE1 504 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 CERKLQ49MI3 558 aaPredicted RBP18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 SLU7O95391 586 aaKnown RBP18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 CALCOCO2Q13137 446 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 MLXIPQ9HAP2 919 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 GAS7O60861 476 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 FAM47AQ5JRC9 791 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 KRT40Q6A162 431 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 MYCT1Q8N699 235 aa18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 ZNF830Q96NB3 372 aaPredicted RBP18.14■□□□□ 0.49
PCDHA3-201ENST00000522353 MYL10Q9BUA6 226 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 ZNF804BA4D1E1 1349 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 TCP10L2B9ZVM9 353 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 TNNC1P63316 161 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 CHRNDQ07001 517 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 MCF2L2Q86YR7 1114 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 EXOC3O60645 756 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 TUBBP07437 444 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 KRT222Q8N1A0 295 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 INF2Q27J81 1249 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 HS1BP3Q53T59 392 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 NACA2Q9H009 215 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 CTNND2Q9UQB3 1225 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 WDR17Q8IZU2 1322 aa18.13■□□□□ 0.49
PCDHA3-201ENST00000522353 MAGI2Q86UL8 1455 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 SEMA3EO15041 775 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 KCNQ3O43525 872 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 PPP1R7Q15435 360 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 CCDC63Q8NA47 563 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 SSH3Q8TE77 659 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 TTC14Q96N46 770 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 NAP1L3Q99457 506 aaPredicted RBP18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 SPOPO43791 374 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 ICA1Q05084 483 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 ZNF654Q8IZM8 581 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 SMCO2A6NFE2 343 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 BBOX1O75936 387 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 ALAS1P13196 640 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 PDE6AP16499 860 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 MAEAQ7L5Y9 396 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 NDUFB9Q9Y6M9 179 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 XRCC6P12956 609 aaKnown RBP eCLIP18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 SCNN1DP51172 638 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 ARHGEF16Q5VV41 709 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 MLKLQ8NB16 471 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 CEP63Q96MT8 703 aa18.12■□□□□ 0.49
PCDHA3-201ENST00000522353 POLR2DO15514 142 aaKnown RBP18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 BTDP43251 543 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 FAM47CQ5HY64 1035 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 USP44Q9H0E7 712 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 AGTPBP1Q9UPW5 1226 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 AKR1B15C9JRZ8 316 aaPredicted RBP18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 E7EWF7 191 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 PPEF1O14829 653 aaPredicted RBP18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 GADL1Q6ZQY3 521 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 UBE2Q2Q8WVN8 375 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 PHKBQ93100 1093 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 NLRP1Q9C000 1473 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 SERPINB2P05120 415 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 BCAMP50895 628 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 SPOUT1Q5T280 376 aaKnown RBP18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 MIER3Q7Z3K6 550 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 CCDC17Q96LX7 622 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 PCP11498 1178 aaKnown RBP18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 PAK1Q13153 545 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 ANKRD35Q8N283 1001 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 TM6SF1Q9BZW5 370 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 WDR70Q9NW82 654 aa18.11■□□□□ 0.49
PCDHA3-201ENST00000522353 KDM3AQ9Y4C1 1321 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 IFNL3Q8IZI9 196 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 FAM135BQ49AJ0 1406 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 MLH3Q9UHC1 1453 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 P4HA1P13674 534 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 CCNA1P78396 465 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 CABP7Q86V35 215 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 GABPB2Q8TAK5 448 aaPredicted RBP18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 PPP1R9BQ96SB3 815 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 ASAP1Q9ULH1 1129 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 PBRM1Q86U86 1689 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 TESPA1A2RU30 521 aaPredicted RBP18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 POLR2MP0CAP2 368 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 DEPTORQ8TB45 409 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 PAIP2Q9BPZ3 127 aaKnown RBP18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 FAM204AQ9H8W3 233 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 DAPK3O43293 454 aa18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 ZSCAN10Q96SZ4 725 aaPredicted RBP18.1■□□□□ 0.49
PCDHA3-201ENST00000522353 PDE8BO95263 885 aa18.09■□□□□ 0.49
PCDHA3-201ENST00000522353 KRT9P35527 623 aa18.09■□□□□ 0.49
PCDHA3-201ENST00000522353 VAV2P52735 878 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 167.4 ms