RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 PUS7LQ9H0K6 701 aaKnown RBP11.3□□□□□ -0.6
HDAC3-215ENST00000519474 EHD4Q9H223 541 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 SERPINB13Q9UIV8 391 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 AGTPBP1Q9UPW5 1226 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 PTCH2Q9Y6C5 1203 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 PHIPQ8WWQ0 1821 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 DOCK2Q92608 1830 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 C19orf81C9J6K1 198 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 USP17L10C9JJH3 530 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 SMIM22K7EJ46 135 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 GNRH1P01148 92 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 SHMT1P34896 483 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 CERKLQ49MI3 558 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-215ENST00000519474 TSHZ3Q63HK5 1081 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 OTUD7AQ8TE49 926 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-215ENST00000519474 PARK7Q99497 189 aaKnown RBP11.29□□□□□ -0.6
HDAC3-215ENST00000519474 TRIM34Q9BYJ4 488 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.29□□□□□ -0.69e-8■■■■■ 30.8
HDAC3-215ENST00000519474 AS3MTQ9HBK9 375 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 EMILIN3Q9NT22 766 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 MCM9Q9NXL9 1143 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 ZBTB21Q9ULJ3 1066 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 CDK5RAP2Q96SN8 1893 aa11.29□□□□□ -0.6
HDAC3-215ENST00000519474 SIPA1L1O43166 1804 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 MBD4O95243 580 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 GH2P01242 217 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 CYP2D6P10635 497 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 HOXA7P31268 230 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-215ENST00000519474 GUCY1A2P33402 732 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 ANKRD45Q5TZF3 282 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 KBTBD3Q8NAB2 608 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 PI4K2BQ8TCG2 481 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 ARMC5Q96C12 935 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 STRBPQ96SI9 672 aaKnown RBP11.28□□□□□ -0.6
HDAC3-215ENST00000519474 P2RX7Q99572 595 aaKnown RBP11.28□□□□□ -0.6
HDAC3-215ENST00000519474 ASCC2Q9H1I8 757 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-215ENST00000519474 ATP8A2Q9NTI2 1148 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 SRRDQ9UH36 339 aa11.28□□□□□ -0.6
HDAC3-215ENST00000519474 POTEFA5A3E0 1075 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L12C9JPN9 530 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L21D6R901 530 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 FMNL1O95466 1100 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-215ENST00000519474 OSBPP22059 807 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 HOXD10P28358 340 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 PRMT2P55345 433 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 HDAC1Q13547 482 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-215ENST00000519474 MTMR2Q13614 643 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 ABCB5Q2M3G0 1257 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 C12orf60Q5U649 245 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 ZSCAN25Q6NSZ9 544 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 ANKRD13CQ8N6S4 541 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 OSBP2Q969R2 916 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 DYNLL2Q96FJ2 89 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 GABRQQ9UN88 632 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 MYH1P12882 1939 aa11.27□□□□□ -0.61
HDAC3-215ENST00000519474 FOCADQ5VW36 1801 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 DOCK1Q14185 1865 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 CYP2D7A0A087X1C5 515 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 RNF113AO15541 343 aaKnown RBP11.26□□□□□ -0.61
HDAC3-215ENST00000519474 IGHDP01880 384 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 Q3C1V9 767 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 CTR9Q6PD62 1173 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 POTEEQ6S8J3 1075 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 NBPF11Q86T75 865 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 SIAH1Q8IUQ4 282 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 EXOC6Q8TAG9 804 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 ACER1Q8TDN7 264 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 ZNF333Q96JL9 665 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 CABP5Q9NP86 173 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 TMOD4Q9NZQ9 345 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 SUPT16HQ9Y5B9 1047 aaKnown RBP11.26□□□□□ -0.61
HDAC3-215ENST00000519474 SLC4A4Q9Y6R1 1079 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 TTC41PQ6P2S7 1318 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 SALL3Q9BXA9 1300 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 MAST2Q6P0Q8 1798 aa11.26□□□□□ -0.61
HDAC3-215ENST00000519474 GSG1L2A8MUP6 293 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 PEX10O60683 326 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 GCLCP48506 637 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-215ENST00000519474 CDK8P49336 464 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 FCGRTP55899 365 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 PABPC4Q13310 644 aaKnown RBP eCLIP11.25□□□□□ -0.61
HDAC3-215ENST00000519474 AAMPQ13685 434 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 SEPT2Q15019 361 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 RAB3GAP1Q15042 981 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L2Q6R6M4 530 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 SLC44A5Q8NCS7 719 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 SMCR8Q8TEV9 937 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-215ENST00000519474 SH3TC2Q8TF17 1288 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 GCC1Q96CN9 775 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 GPATCH3Q96I76 525 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 RBPJLQ9UBG7 517 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 STAP2Q9UGK3 403 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 GJD2Q9UKL4 321 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 PNMA3Q9UL41 463 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 PTPRFP10586 1907 aa11.25□□□□□ -0.61
HDAC3-215ENST00000519474 A0A1W2PRG0 241 aa11.24□□□□□ -0.61
HDAC3-215ENST00000519474 ERC2O15083 957 aa11.24□□□□□ -0.61
HDAC3-215ENST00000519474 GLRX3O76003 335 aaKnown RBP11.24□□□□□ -0.61
HDAC3-215ENST00000519474 EN2P19622 333 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-215ENST00000519474 FAM110CQ1W6H9 321 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms