RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 PXDNQ92626 1479 aa9.41□□□□□ -0.9
VIM-207ENST00000495528 PLEKHH1Q9ULM0 1364 aa9.41□□□□□ -0.9
VIM-207ENST00000495528 KRBA1A5PL33 1030 aa9.41□□□□□ -0.9
VIM-207ENST00000495528 APBA3O96018 575 aa9.41□□□□□ -0.9
VIM-207ENST00000495528 SUZ12Q15022 739 aaKnown RBP9.41□□□□□ -0.9
VIM-207ENST00000495528 ZNF428Q96B54 188 aa9.41□□□□□ -0.9
VIM-207ENST00000495528 ZFYVE1Q9HBF4 777 aa9.41□□□□□ -0.9
VIM-207ENST00000495528 OSGEPQ9NPF4 335 aa9.41□□□□□ -0.9
VIM-207ENST00000495528 LRPPRCP42704 1394 aaKnown RBP9.4□□□□□ -0.9
VIM-207ENST00000495528 ADAM11O75078 769 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 GDF11O95390 407 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 B3GALT4O96024 378 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 SELPP16109 830 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 GSK3AP49840 483 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 RPS26P11Q5JNZ5 115 aaPredicted RBP9.4□□□□□ -0.9
VIM-207ENST00000495528 MEI1Q5TIA1 1274 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 UNC5CLQ8IV45 518 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 USP26Q9BXU7 913 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 BCL11AQ9H165 835 aa9.4□□□□□ -0.9
VIM-207ENST00000495528 ABCC11Q96J66 1382 aa9.39□□□□□ -0.91
VIM-207ENST00000495528 COL22A1Q8NFW1 1626 aaPredicted RBP9.39□□□□□ -0.91
VIM-207ENST00000495528 SPATA31A3Q5VYP0 1347 aa9.39□□□□□ -0.91
VIM-207ENST00000495528 TM4SF5O14894 197 aa9.39□□□□□ -0.91
VIM-207ENST00000495528 CTSHP09668 335 aa9.39□□□□□ -0.91
VIM-207ENST00000495528 KRT28Q7Z3Y7 464 aa9.39□□□□□ -0.91
VIM-207ENST00000495528 UBASH3BQ8TF42 649 aa9.39□□□□□ -0.91
VIM-207ENST00000495528 WISP1O95388 367 aa9.38□□□□□ -0.91
VIM-207ENST00000495528 IGF2-ASQ6U949 168 aa9.38□□□□□ -0.91
VIM-207ENST00000495528 ALYREFQ86V81 257 aaKnown RBP9.38□□□□□ -0.91
VIM-207ENST00000495528 SOX17Q9H6I2 414 aaPredicted RBP9.38□□□□□ -0.91
VIM-207ENST00000495528 TMEM39AQ9NV64 488 aa9.38□□□□□ -0.91
VIM-207ENST00000495528 SRCAPQ6ZRS2 3230 aa9.38□□□□□ -0.91
VIM-207ENST00000495528 TECPR2O15040 1411 aa9.38□□□□□ -0.91
VIM-207ENST00000495528 CDC42BPGQ6DT37 1551 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 CHRNA4P43681 627 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 PPP2R3AQ06190 1150 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 DUOXA2Q1HG44 320 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 ACAD11Q709F0 780 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 DEFB132Q7Z7B7 95 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 TMEM151AQ8N4L1 468 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 DDX54Q8TDD1 881 aaKnown RBP9.37□□□□□ -0.91
VIM-207ENST00000495528 DCAF11Q8TEB1 546 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 NACC1Q96RE7 527 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 MPHOSPH9Q99550 1183 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 CCDC144AA2RUR9 1427 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 SPATA31E1Q6ZUB1 1445 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 PPLO60437 1756 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 ANKRD30BQ9BXX2 1392 aa9.37□□□□□ -0.91
VIM-207ENST00000495528 SLIT2O94813 1529 aa9.36□□□□□ -0.91
VIM-207ENST00000495528 RALGAPBQ86X10 1494 aa9.36□□□□□ -0.91
VIM-207ENST00000495528 UNCXA6NJT0 531 aa9.36□□□□□ -0.91
VIM-207ENST00000495528 ALX3O95076 343 aa9.36□□□□□ -0.91
VIM-207ENST00000495528 RBM25P49756 843 aaKnown RBP9.36□□□□□ -0.91
VIM-207ENST00000495528 AGGF1Q8N302 714 aaeCLIP9.36□□□□□ -0.91
VIM-207ENST00000495528 LENG1Q96BZ8 264 aaPredicted RBP9.36□□□□□ -0.91
VIM-207ENST00000495528 MRRFQ96E11 262 aaKnown RBP9.36□□□□□ -0.91
VIM-207ENST00000495528 NECAB3Q96P71 396 aaPredicted RBP9.36□□□□□ -0.91
VIM-207ENST00000495528 TRIM56Q9BRZ2 755 aaKnown RBP9.36□□□□□ -0.91
VIM-207ENST00000495528 ZC3H12CQ9C0D7 883 aaKnown RBP9.36□□□□□ -0.91
VIM-207ENST00000495528 PPM1HQ9ULR3 514 aa9.36□□□□□ -0.91
VIM-207ENST00000495528 C1QTNF9BB2RNN3 333 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 C9orf172C9J069 976 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 ECEL1O95672 775 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 CELA3AP09093 270 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 MAOBP27338 520 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 MRPL58Q14197 206 aaKnown RBP9.35□□□□□ -0.91
VIM-207ENST00000495528 VPS72Q15906 364 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 CD163Q86VB7 1156 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 CRELD1Q96HD1 420 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 CEP44Q9C0F1 390 aa9.35□□□□□ -0.91
VIM-207ENST00000495528 MRPL18Q9H0U6 180 aaKnown RBP9.35□□□□□ -0.91
VIM-207ENST00000495528 YTHDC2Q9H6S0 1430 aaKnown RBP9.35□□□□□ -0.91
VIM-207ENST00000495528 C14orf93Q9H972 538 aaKnown RBP9.35□□□□□ -0.91
VIM-207ENST00000495528 PIK3C2GO75747 1445 aa9.34□□□□□ -0.91
VIM-207ENST00000495528 BLMP54132 1417 aaPredicted RBP9.34□□□□□ -0.91
VIM-207ENST00000495528 ENC1O14682 589 aa9.34□□□□□ -0.91
VIM-207ENST00000495528 PAGE1O75459 146 aa9.34□□□□□ -0.91
VIM-207ENST00000495528 CYP11A1P05108 521 aa9.34□□□□□ -0.91
VIM-207ENST00000495528 POU4F3Q15319 338 aa9.34□□□□□ -0.91
VIM-207ENST00000495528 TAF1CQ15572 869 aaPredicted RBP9.34□□□□□ -0.91
VIM-207ENST00000495528 CCDC85BQ15834 202 aaPredicted RBP9.34□□□□□ -0.91
VIM-207ENST00000495528 TSNAXIP1Q2TAA8 658 aa9.34□□□□□ -0.91
VIM-207ENST00000495528 STK35Q8TDR2 534 aa9.34□□□□□ -0.91
VIM-207ENST00000495528 CORO1BQ9BR76 489 aa9.34□□□□□ -0.91
VIM-207ENST00000495528 GLI3P10071 1580 aa9.33□□□□□ -0.92
VIM-207ENST00000495528 FAM83GA6ND36 823 aa9.33□□□□□ -0.92
VIM-207ENST00000495528 CTSBP07858 339 aa9.33□□□□□ -0.92
VIM-207ENST00000495528 SAFB2Q14151 953 aaKnown RBP eCLIP9.33□□□□□ -0.92
VIM-207ENST00000495528 MAP3K11Q16584 847 aa9.33□□□□□ -0.92
VIM-207ENST00000495528 SULF2Q8IWU5 870 aa9.33□□□□□ -0.92
VIM-207ENST00000495528 PMFBP1Q8TBY8 1022 aa9.33□□□□□ -0.92
VIM-207ENST00000495528 PRAM1Q96QH2 718 aa9.33□□□□□ -0.92
VIM-207ENST00000495528 CBX8Q9HC52 389 aa9.33□□□□□ -0.92
VIM-207ENST00000495528 LOC100289279A0A1B0GTE1 492 aa9.32□□□□□ -0.92
VIM-207ENST00000495528 DLGAP3O95886 979 aa9.32□□□□□ -0.92
VIM-207ENST00000495528 IREB2P48200 963 aaKnown RBP9.32□□□□□ -0.92
VIM-207ENST00000495528 NRG1Q02297 640 aaPredicted RBP9.32□□□□□ -0.92
VIM-207ENST00000495528 KIAA1211Q6ZU35 1233 aa9.32□□□□□ -0.92
VIM-207ENST00000495528 KRT27Q7Z3Y8 459 aa9.32□□□□□ -0.92
VIM-207ENST00000495528 TMEM87AQ8NBN3 555 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms