RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 AS3MTQ9HBK9 375 aa30.21■■■□□ 2.43
HMGN1-217ENST00000489072 BAZ2AQ9UIF9 1905 aaKnown RBP30.2■■■□□ 2.43
HMGN1-217ENST00000489072 ECM2O94769 699 aaPredicted RBP30.2■■■□□ 2.43
HMGN1-217ENST00000489072 MBD4O95243 580 aa30.2■■■□□ 2.43
HMGN1-217ENST00000489072 KIF22Q14807 665 aa30.2■■■□□ 2.43
HMGN1-217ENST00000489072 UBE3CQ15386 1083 aa30.2■■■□□ 2.43
HMGN1-217ENST00000489072 DCP1AQ9NPI6 582 aaPredicted RBP30.2■■■□□ 2.43
HMGN1-217ENST00000489072 GINM1Q9NU53 330 aa30.2■■■□□ 2.43
HMGN1-217ENST00000489072 PRKAB2O43741 272 aa30.19■■■□□ 2.42
HMGN1-217ENST00000489072 SH3D19Q5HYK7 790 aa30.19■■■□□ 2.42
HMGN1-217ENST00000489072 GPATCH3Q96I76 525 aa30.19■■■□□ 2.42
HMGN1-217ENST00000489072 MGAMO43451 1857 aa30.19■■■□□ 2.42
HMGN1-217ENST00000489072 POLR3DP05423 398 aaPredicted RBP30.18■■■□□ 2.42
HMGN1-217ENST00000489072 OTUD7AQ8TE49 926 aaPredicted RBP30.18■■■□□ 2.42
HMGN1-217ENST00000489072 MCM9Q9NXL9 1143 aa30.18■■■□□ 2.42
HMGN1-217ENST00000489072 PTCH2Q9Y6C5 1203 aa30.18■■■□□ 2.42
HMGN1-217ENST00000489072 TNRC18O15417 2968 aaPredicted RBP30.18■■■□□ 2.42
HMGN1-217ENST00000489072 GH2P01242 217 aa30.17■■■□□ 2.42
HMGN1-217ENST00000489072 MTMR2Q13614 643 aa30.17■■■□□ 2.42
HMGN1-217ENST00000489072 TRIM47Q96LD4 638 aa30.17■■■□□ 2.42
HMGN1-217ENST00000489072 CYP2D6P10635 497 aa30.16■■■□□ 2.42
HMGN1-217ENST00000489072 SHMT1P34896 483 aa30.16■■■□□ 2.42
HMGN1-217ENST00000489072 PSMC4P43686 418 aa30.16■■■□□ 2.42
HMGN1-217ENST00000489072 BACE1P56817 501 aa30.16■■■□□ 2.42
HMGN1-217ENST00000489072 MLLT1Q03111 559 aaPredicted RBP30.16■■■□□ 2.42
HMGN1-217ENST00000489072 GABPAQ06546 454 aa30.16■■■□□ 2.42
HMGN1-217ENST00000489072 KIAA0100Q14667 2235 aaKnown RBP30.15■■■□□ 2.42
HMGN1-217ENST00000489072 ZSCAN25Q6NSZ9 544 aa30.15■■■□□ 2.42
HMGN1-217ENST00000489072 KBTBD3Q8NAB2 608 aa30.15■■■□□ 2.42
HMGN1-217ENST00000489072 PUS7LQ9H0K6 701 aaKnown RBP30.15■■■□□ 2.42
HMGN1-217ENST00000489072 SMCR8Q8TEV9 937 aaPredicted RBP30.14■■■□□ 2.42
HMGN1-217ENST00000489072 ARMC5Q96C12 935 aa30.14■■■□□ 2.42
HMGN1-217ENST00000489072 GNRH1P01148 92 aa30.13■■■□□ 2.41
HMGN1-217ENST00000489072 HDAC1Q13547 482 aaPredicted RBP30.13■■■□□ 2.41
HMGN1-217ENST00000489072 CERKLQ49MI3 558 aaPredicted RBP30.13■■■□□ 2.41
HMGN1-217ENST00000489072 PI4K2BQ8TCG2 481 aa30.13■■■□□ 2.41
HMGN1-217ENST00000489072 ATP8A2Q9NTI2 1148 aa30.13■■■□□ 2.41
HMGN1-217ENST00000489072 PNMA3Q9UL41 463 aa30.13■■■□□ 2.41
HMGN1-217ENST00000489072 TTC41PQ6P2S7 1318 aa30.13■■■□□ 2.41
HMGN1-217ENST00000489072 USP17L10C9JJH3 530 aa30.12■■■□□ 2.41
HMGN1-217ENST00000489072 MYH8P13535 1937 aa30.12■■■□□ 2.41
HMGN1-217ENST00000489072 C19orf81C9J6K1 198 aa30.11■■■□□ 2.41
HMGN1-217ENST00000489072 FMNL1O95466 1100 aaPredicted RBP30.11■■■□□ 2.41
HMGN1-217ENST00000489072 OSBPP22059 807 aa30.11■■■□□ 2.41
HMGN1-217ENST00000489072 ABCB5Q2M3G0 1257 aa30.11■■■□□ 2.41
HMGN1-217ENST00000489072 ASCC2Q9H1I8 757 aaPredicted RBP30.11■■■□□ 2.41
HMGN1-217ENST00000489072 TMOD4Q9NZQ9 345 aa30.11■■■□□ 2.41
HMGN1-217ENST00000489072 SRRDQ9UH36 339 aa30.11■■■□□ 2.41
HMGN1-217ENST00000489072 PABPC4Q13310 644 aaKnown RBP eCLIP30.1■■■□□ 2.41
HMGN1-217ENST00000489072 SALL3Q9BXA9 1300 aa30.1■■■□□ 2.41
HMGN1-217ENST00000489072 DOCK3Q8IZD9 2030 aa30.1■■■□□ 2.41
HMGN1-217ENST00000489072 SMIM22K7EJ46 135 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 GUCY1A2P33402 732 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 PRMT2P55345 433 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 RAB3GAP1Q15042 981 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 SLC9C1Q4G0N8 1177 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 ANKRD45Q5TZF3 282 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 RBBP6Q7Z6E9 1792 aaKnown RBP30.09■■■□□ 2.41
HMGN1-217ENST00000489072 ANKRD13CQ8N6S4 541 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 SLC44A5Q8NCS7 719 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 DYNLL2Q96FJ2 89 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 SLC4A4Q9Y6R1 1079 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 BRCA2P51587 3418 aa30.09■■■□□ 2.41
HMGN1-217ENST00000489072 CYP2D7A0A087X1C5 515 aa30.08■■■□□ 2.41
HMGN1-217ENST00000489072 ERC2O15083 957 aa30.08■■■□□ 2.41
HMGN1-217ENST00000489072 RNF113AO15541 343 aaKnown RBP30.08■■■□□ 2.41
HMGN1-217ENST00000489072 MX1P20591 662 aa30.08■■■□□ 2.41
HMGN1-217ENST00000489072 FCGRTP55899 365 aa30.08■■■□□ 2.41
HMGN1-217ENST00000489072 OSBP2Q969R2 916 aa30.08■■■□□ 2.41
HMGN1-217ENST00000489072 GCC1Q96CN9 775 aa30.08■■■□□ 2.41
HMGN1-217ENST00000489072 ZNF333Q96JL9 665 aa30.08■■■□□ 2.41
HMGN1-217ENST00000489072 EMILIN3Q9NT22 766 aa30.08■■■□□ 2.41
HMGN1-217ENST00000489072 GLRX3O76003 335 aaKnown RBP30.07■■■□□ 2.4
HMGN1-217ENST00000489072 HOXA7P31268 230 aaPredicted RBP30.07■■■□□ 2.4
HMGN1-217ENST00000489072 AAMPQ13685 434 aa30.07■■■□□ 2.4
HMGN1-217ENST00000489072 STRBPQ96SI9 672 aaKnown RBP30.07■■■□□ 2.4
HMGN1-217ENST00000489072 CABP5Q9NP86 173 aa30.07■■■□□ 2.4
HMGN1-217ENST00000489072 MYPNQ86TC9 1320 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 USP17L12C9JPN9 530 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 USP17L21D6R901 530 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 HOXD10P28358 340 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 FAM110CQ1W6H9 321 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 C12orf60Q5U649 245 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 USP17L2Q6R6M4 530 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 EXOC6Q8TAG9 804 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 ACER1Q8TDN7 264 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 SH3TC2Q8TF17 1288 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 APPBP2Q92624 585 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 PDE4DIPQ5VU43 2346 aa30.06■■■□□ 2.4
HMGN1-217ENST00000489072 POTEFA5A3E0 1075 aa30.05■■■□□ 2.4
HMGN1-217ENST00000489072 GCLCP48506 637 aaPredicted RBP30.05■■■□□ 2.4
HMGN1-217ENST00000489072 PRKCZQ05513 592 aa30.05■■■□□ 2.4
HMGN1-217ENST00000489072 SEPT2Q15019 361 aa30.05■■■□□ 2.4
HMGN1-217ENST00000489072 ZYXQ15942 572 aaKnown RBP30.05■■■□□ 2.4
HMGN1-217ENST00000489072 ZFYP08048 801 aaPredicted RBP30.04■■■□□ 2.4
HMGN1-217ENST00000489072 IRX3P78415 501 aaPredicted RBP30.04■■■□□ 2.4
HMGN1-217ENST00000489072 P2RX7Q99572 595 aaKnown RBP30.04■■■□□ 2.4
HMGN1-217ENST00000489072 FEZ1Q99689 392 aa30.04■■■□□ 2.4
HMGN1-217ENST00000489072 SWAP70Q9UH65 585 aa30.04■■■□□ 2.4
HMGN1-217ENST00000489072 GABRQQ9UN88 632 aa30.04■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms