RNA–Protein interactions for RNA: ENST00000453259.2

LYSMD3-202, Transcript of LysM domain containing 3, humanhuman

TSL 3

Gene LYSMD3, Length 553 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-202ENST00000453259 COL6A1P12109 1028 aa17.56■□□□□ 0.4
LYSMD3-202ENST00000453259 ZKSCAN1P17029 563 aaPredicted RBP17.56■□□□□ 0.4
LYSMD3-202ENST00000453259 TMED8Q6PL24 325 aaPredicted RBP17.56■□□□□ 0.4
LYSMD3-202ENST00000453259 DEFB123Q8N688 67 aa17.56■□□□□ 0.4
LYSMD3-202ENST00000453259 TRIM34Q9BYJ4 488 aa17.56■□□□□ 0.4
LYSMD3-202ENST00000453259 GPR108Q9NPR9 543 aa17.56■□□□□ 0.4
LYSMD3-202ENST00000453259 IPO8O15397 1037 aaKnown RBP17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 RGS2P41220 211 aa17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 MCAMP43121 646 aa17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 MAGEA10P43363 369 aaPredicted RBP17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 G3BP1Q13283 466 aaKnown RBP eCLIP17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 NAA16Q6N069 864 aaPredicted RBP17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 CCAR1Q8IX12 1150 aaKnown RBP17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 CRACR2BQ8N4Y2 399 aaPredicted RBP17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 USP6NLQ92738 828 aa17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 APBA2Q99767 749 aa17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 ZMYND8Q9ULU4 1186 aaPredicted RBP17.55■□□□□ 0.4
LYSMD3-202ENST00000453259 FLT1P17948 1338 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 GLRX3O76003 335 aaKnown RBP17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 GNAI2P04899 355 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 CYP2B6P20813 491 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 ERVK-9P63128 1117 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 ERVK-24P63145 666 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 TRIM32Q13049 653 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 MAPK8IP2Q13387 824 aaPredicted RBP17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 RRP1BQ14684 758 aaKnown RBP17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 PI16Q6UXB8 463 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 TBC1D9Q6ZT07 1266 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 SH3RF3Q8TEJ3 882 aaPredicted RBP17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 CDCA7LQ96GN5 454 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 ZNF512BQ96KM6 892 aaPredicted RBP17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 P2RX7Q99572 595 aaKnown RBP17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 UBE2OQ9C0C9 1292 aaKnown RBP17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 FOCADQ5VW36 1801 aa17.54■□□□□ 0.4
LYSMD3-202ENST00000453259 PFASO15067 1338 aa17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 HLA-DOAP06340 250 aa17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 RARSP54136 660 aaKnown RBP17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 CCNA1P78396 465 aa17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 CCDC158Q5M9N0 1113 aa17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 C12orf42Q96LP6 360 aa17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 RBPJLQ9UBG7 517 aa17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 ZBTB21Q9ULJ3 1066 aa17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 SIPA1L1O43166 1804 aa17.53■□□□□ 0.4
LYSMD3-202ENST00000453259 MSCO60682 206 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 MORN1Q5T089 497 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 USP17L2Q6R6M4 530 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 GPR142Q7Z601 462 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 PLEKHH3Q7Z736 793 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 DNAJC18Q9H819 358 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 TXNRD2Q9NNW7 524 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 MTMR10Q9NXD2 777 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 AATFQ9NY61 560 aaKnown RBP eCLIP17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 RABGAP1Q9Y3P9 1069 aa17.52■□□□□ 0.4
LYSMD3-202ENST00000453259 A0A0C4DFX4 3053 aa17.51■□□□□ 0.39
LYSMD3-202ENST00000453259 USP14P54578 494 aa17.51■□□□□ 0.39
LYSMD3-202ENST00000453259 CACNB2Q08289 660 aaPredicted RBP17.51■□□□□ 0.39
LYSMD3-202ENST00000453259 LHX8Q68G74 356 aa17.51■□□□□ 0.39
LYSMD3-202ENST00000453259 FAM109BQ6ICB4 259 aaPredicted RBP17.51■□□□□ 0.39
LYSMD3-202ENST00000453259 TGFBRAP1Q8WUH2 860 aa17.51■□□□□ 0.39
LYSMD3-202ENST00000453259 CUL9Q8IWT3 2517 aa17.51■□□□□ 0.39
LYSMD3-202ENST00000453259 SYN1P17600 705 aa17.5■□□□□ 0.39
LYSMD3-202ENST00000453259 TTC39AQ5SRH9 613 aa17.5■□□□□ 0.39
LYSMD3-202ENST00000453259 LBX2Q6XYB7 198 aa17.5■□□□□ 0.39
LYSMD3-202ENST00000453259 EHD4Q9H223 541 aa17.5■□□□□ 0.39
LYSMD3-202ENST00000453259 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.5■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L15C9J2P7 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L13C9JLJ4 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L11C9JVI0 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L18D6R9N7 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L22D6RA61 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L17D6RBQ6 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L19D6RCP7 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L20D6RJB6 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 USP17L24Q0WX57 530 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 MAP2K5Q13163 448 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 MFSD14CQ5VZR4 134 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 MAPKAPK5Q8IW41 473 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 CWC22Q9HCG8 908 aaKnown RBP17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 EMILIN3Q9NT22 766 aa17.49■□□□□ 0.39
LYSMD3-202ENST00000453259 CDK5RAP2Q96SN8 1893 aa17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 SLC15A5A6NIM6 579 aa17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 HOXC6P09630 235 aa17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 TNNI3KQ59H18 835 aa17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 TATDN1Q6P1N9 297 aa17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 EDC3Q96F86 508 aaKnown RBP17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 PORCNQ9H237 461 aa17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 PALD1Q9ULE6 856 aa17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 FPGT-TNNI3KV9GXZ4 949 aa17.48■□□□□ 0.39
LYSMD3-202ENST00000453259 PNMA6EA0A0J9YXQ4 647 aa17.47■□□□□ 0.39
LYSMD3-202ENST00000453259 GDF11O95390 407 aa17.47■□□□□ 0.39
LYSMD3-202ENST00000453259 CYP2E1P05181 493 aaPredicted RBP17.47■□□□□ 0.39
LYSMD3-202ENST00000453259 TRIM27P14373 513 aa17.47■□□□□ 0.39
LYSMD3-202ENST00000453259 JAG1P78504 1218 aa17.47■□□□□ 0.39
LYSMD3-202ENST00000453259 PAGR1Q9BTK6 254 aa17.47■□□□□ 0.39
LYSMD3-202ENST00000453259 KIAA1683Q9H0B3 1180 aa17.47■□□□□ 0.39
LYSMD3-202ENST00000453259 IVNS1ABPQ9Y6Y0 642 aa17.47■□□□□ 0.39
LYSMD3-202ENST00000453259 CCND3P30281 292 aaPredicted RBP17.46■□□□□ 0.39
LYSMD3-202ENST00000453259 POLA2Q14181 598 aa17.46■□□□□ 0.39
LYSMD3-202ENST00000453259 LRRC26Q2I0M4 334 aa17.46■□□□□ 0.39
LYSMD3-202ENST00000453259 Q3C1V9 767 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms