RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 ZNHIT6Q9NWK9 470 aaKnown RBP7.5□□□□□ -1.21
TM9SF4-202ENST00000398022 TBK1Q9UHD2 729 aa7.5□□□□□ -1.21
TM9SF4-202ENST00000398022 CA8P35219 290 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 WTAPQ15007 396 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 GPCPD1Q9NPB8 672 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 MKL2Q9ULH7 1088 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 RRP15Q9Y3B9 282 aaKnown RBP7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 ITGB4P16144 1822 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 A0A1B0GUL7 405 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 SLFN14P0C7P3 912 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 SFSWAPQ12872 951 aaKnown RBP7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 COX10Q12887 443 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 SYCP2LQ5T4T6 812 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 CCDC30Q5VVM6 783 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 PACS1Q6VY07 963 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 GPT2Q8TD30 523 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 SH3TC2Q8TF17 1288 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 QPCTLQ9NXS2 382 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 EVLQ9UI08 416 aaPredicted RBP7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 RABGAP1Q9Y3P9 1069 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 ATP6V1DQ9Y5K8 247 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 DLG5Q8TDM6 1919 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 A0A1W2PRQ8 180 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 H0Y3Z8 333 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 HOXC13P31276 330 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 FKBP5Q13451 457 aaPredicted RBP7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 KRT24Q2M2I5 525 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 DAAM2Q86T65 1068 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 NPAS4Q8IUM7 802 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 PROM2Q8N271 834 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 APPL2Q8NEU8 664 aa7.49□□□□□ -1.21
TM9SF4-202ENST00000398022 GRXCR2A6NFK2 248 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 TBC1D12O60347 775 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 TPP2P29144 1249 aaPredicted RBP7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 ICA1Q05084 483 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 DEUP1Q05D60 604 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 TAF7Q15545 349 aaPredicted RBP7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 CCBE1Q6UXH8 406 aaPredicted RBP7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 TMEM87BQ96K49 555 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 UBAP1Q9NZ09 502 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 OGFRQ9NZT2 677 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 PCSK1NQ9UHG2 260 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 DMGDHQ9UI17 866 aaKnown RBP7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 EXOC6BQ9Y2D4 811 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 V9GYY5 206 aaPredicted RBP7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 ZSCAN9O15535 394 aaPredicted RBP7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 POLA2Q14181 598 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 ANKRD18AQ8IVF6 992 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 RNF214Q8ND24 703 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 DDX12PQ92771 950 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 SGIP1Q9BQI5 828 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 UBR3Q6ZT12 1888 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 TRAPPC10P48553 1259 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 TBC1D20Q96BZ9 403 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 SCLT1Q96NL6 688 aa7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 SPATS2LQ9NUQ6 558 aaKnown RBP7.48□□□□□ -1.21
TM9SF4-202ENST00000398022 SGTAO43765 313 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 RECKO95980 971 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 CYP11B2P19099 503 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 CUL4AQ13619 759 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 MUM1Q2TAK8 710 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 RNF20Q5VTR2 975 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 SNX32Q86XE0 403 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 NUTM1Q86Y26 1132 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 FLCNQ8NFG4 579 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 ZNF496Q96IT1 587 aaPredicted RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 PAWRQ96IZ0 340 aaKnown RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 PRSS47A8MTI9 375 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 F6X3S4 739 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 SMC2O95347 1197 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 COL5A3P25940 1745 aaPredicted RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 CFAP58Q5T655 872 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 CPLX2Q6PUV4 134 aaKnown RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 USP33Q8TEY7 942 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 ZDHHC9Q9Y397 364 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 AOX1Q06278 1338 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 SOS1Q07889 1333 aaPredicted RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 GTPBP10A4D1E9 387 aaKnown RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 C19orf81C9J6K1 198 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 GTF2F1P35269 517 aaKnown RBP eCLIP7.47□□□□□ -1.211e-13■■■■■ 55.2
TM9SF4-202ENST00000398022 ATP8B2P98198 1209 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 NEK10Q6ZWH5 1172 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 KRT27Q7Z3Y8 459 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 DZIP1Q86YF9 867 aaKnown RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 ZSWIM4Q9H7M6 989 aa7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 TTF2Q9UNY4 1162 aaKnown RBP7.47□□□□□ -1.21
TM9SF4-202ENST00000398022 USP6P35125 1406 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 LINC00854A0A1B0GVQ3 168 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 TBX3O15119 743 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 UBTFL1P0CB47 393 aaPredicted RBP7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 CHMLP26374 656 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 OAS2P29728 719 aaKnown RBP7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 PRPHP41219 470 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 SART3Q15020 963 aaKnown RBP7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 LEKR1Q6ZMV7 388 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 C11orf74Q86VG3 221 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 PEX5LQ8IYB4 626 aa7.46□□□□□ -1.21
TM9SF4-202ENST00000398022 USP6NLQ92738 828 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms