RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 N4BP2L2Q92802 583 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 PPP1R16BQ96T49 567 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 PLEKHH1Q9ULM0 1364 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 MAP3K13O43283 966 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 SKOR2Q2VWA4 1001 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 HAUS3Q68CZ6 603 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 PI4KBQ9UBF8 816 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 GOLGA6CA6NDK9 693 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 GOLGA6BA6NDN3 693 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 MANSC4A6NHS7 340 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 GOLGA6DP0CG33 693 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 GJC1P36383 396 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 CCT6AP40227 531 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 TIMM10P62072 90 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 RNF219Q5W0B1 726 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 CCDC83Q8IWF9 413 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 ANKRD13AQ8IZ07 590 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 CCDC17Q96LX7 622 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 NEK1Q96PY6 1258 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 TDRD3Q9H7E2 651 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 GOLGA6AQ9NYA3 693 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 A0A1W2PP64 1363 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 COL15A1P39059 1388 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 WDR97A6NE52 1622 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 GSTTP1A0A1W2PQM5 241 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 CRKP46108 304 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 TFAP4Q01664 338 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 LETM2Q2VYF4 491 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 CFAP65Q6ZU64 1925 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 MAPKBP1O60336 1514 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 NOGQ13253 232 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 CLEC4GQ6UXB4 293 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 NKX2-3Q8TAU0 364 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 GTF3C2Q8WUA4 911 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 MMS19Q96T76 1030 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 ACBD3Q9H3P7 528 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 TTC37Q6PGP7 1564 aa10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 FRMPD2Q68DX3 1309 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-202ENST00000381753 FAM102BQ5T8I3 360 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 MIS18BP1Q6P0N0 1132 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 KIAA1328Q86T90 577 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 METP08581 1390 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 SPATA31A5Q5VU36 1347 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 SPATA31A7Q8IWB4 1347 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 UBE4AQ14139 1066 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 TBC1D9BQ66K14 1250 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 ZNF449Q6P9G9 518 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 BARGINQ6ZT62 677 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 TTC30BQ8N4P2 665 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 RGS2P41220 211 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 KRT17Q04695 432 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 POLA2Q14181 598 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 TMEM39AQ9NV64 488 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 CAMSAP1Q5T5Y3 1602 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 ABCA5Q8WWZ7 1642 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 EEF2P13639 858 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 KRT5P13647 590 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 ZNF18P17022 549 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 DDNO94850 711 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 RPS12P25398 132 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 FAM114A1Q8IWE2 563 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 CHAMP1Q96JM3 812 aa10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 BCCIPQ9P287 314 aaKnown RBP eCLIP10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 NKTRP30414 1462 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-202ENST00000381753 PEG3Q9GZU2 1588 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 USP17L10C9JJH3 530 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 SPA17Q15506 151 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 RSRC2Q7L4I2 434 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 NACC1Q96RE7 527 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 RTL1A6NKG5 1358 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 ZFYVE9O95405 1425 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 CAPN9O14815 690 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 KRT2P35908 639 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 ASIC1P78348 528 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 SPP2Q13103 211 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 NFIXQ14938 502 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 PCCAP05165 728 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 STIM2Q9P246 746 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 FRMD4BQ9Y2L6 1034 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 TTLL4Q14679 1199 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 XKR9Q5GH70 373 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 SND1Q7KZF4 910 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 PANK2Q9BZ23 570 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 ATP8B3O60423 1300 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 PARD3Q8TEW0 1356 aa10.35□□□□□ -0.75
LIMCH1-202ENST00000381753 BMP15O95972 392 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 CCDC175P0C221 793 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 PTPREP23469 700 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 SDE2Q6IQ49 451 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 KANK3Q6NY19 840 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 HAUS6Q7Z4H7 955 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 RBM46Q8TBY0 533 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 STYK1Q6J9G0 422 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 SEPT9Q9UHD8 586 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 DOLKQ9UPQ8 538 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 ESYT2A0FGR8 921 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 FERP16591 822 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 NBPF20Q3BBV1 942 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 LDHDQ86WU2 507 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 CDHR1Q96JP9 859 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms