RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 DAB2P98082 770 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 IFI16Q16666 785 aaKnown RBP6.92□□□□□ -1.3
USP48-202ENST00000374730 LRFN4Q6PJG9 635 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 CDC37L1Q7L3B6 337 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 CYFIP1Q7L576 1253 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 HDXQ7Z353 690 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 WFDC3Q8IUB2 231 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 PLD6Q8N2A8 252 aaKnown RBP6.92□□□□□ -1.3
USP48-202ENST00000374730 FAM181AQ8N9Y4 354 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 ZNF507Q8TCN5 953 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 PRDM10Q9NQV6 1147 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 PARP2Q9UGN5 583 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 SNCAIPQ9Y6H5 919 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 CCDC18Q5T9S5 1454 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 IGF2BP3O00425 579 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP48-202ENST00000374730 ERCC3P19447 782 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 PRKCQQ04759 706 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 PTPN11Q06124 597 aaPredicted RBP6.91□□□□□ -1.3
USP48-202ENST00000374730 INPP5AQ14642 412 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 ARHGAP27Q6ZUM4 889 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 UBE3DQ7Z6J8 389 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 FBXO33Q7Z6M2 555 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 PLPPR2Q96GM1 343 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 FMNL2Q96PY5 1086 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 RNF19AQ9NV58 838 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 GTF2IRD1Q9UHL9 959 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 VAV3Q9UKW4 847 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 U3KQE9 123 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 SETD5Q9C0A6 1442 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 ARHGEF11O15085 1522 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 MAPKBP1O60336 1514 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 UGGT2Q9NYU1 1516 aa6.91□□□□□ -1.3
USP48-202ENST00000374730 LRIG2O94898 1065 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 RLBP1P12271 317 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 LMNB1P20700 586 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 CAP2P40123 477 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 LIG3P49916 1009 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 ST13P50502 369 aaKnown RBP6.9□□□□□ -1.3
USP48-202ENST00000374730 PSMD2Q13200 908 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 WIPI1Q5MNZ9 446 aaPredicted RBP6.9□□□□□ -1.3
USP48-202ENST00000374730 AGMOQ6ZNB7 445 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 FAM214BQ7L5A3 538 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 TMC4Q7Z404 712 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 NOC4LQ9BVI4 516 aaKnown RBP6.9□□□□□ -1.3
USP48-202ENST00000374730 WNT10AQ9GZT5 417 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 TNKS2Q9H2K2 1166 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 TACC3Q9Y6A5 838 aa6.9□□□□□ -1.3
USP48-202ENST00000374730 RAB3GAP2Q9H2M9 1393 aa6.9□□□□□ -1.31
USP48-202ENST00000374730 EIF4G3O43432 1585 aaKnown RBP6.9□□□□□ -1.31
USP48-202ENST00000374730 TMEM265A0A087WTH1 108 aa6.89□□□□□ -1.31
USP48-202ENST00000374730 PRAMEF27A3QJZ7 478 aa6.89□□□□□ -1.31
USP48-202ENST00000374730 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.89□□□□□ -1.31
USP48-202ENST00000374730 XPCQ01831 940 aaPredicted RBP6.89□□□□□ -1.31
USP48-202ENST00000374730 MEI1Q5TIA1 1274 aa6.89□□□□□ -1.31
USP48-202ENST00000374730 ZNF574Q6ZN55 896 aaPredicted RBP6.89□□□□□ -1.31
USP48-202ENST00000374730 ARMCX6Q7L4S7 300 aa6.89□□□□□ -1.31
USP48-202ENST00000374730 HEXIM2Q96MH2 286 aaKnown RBP6.89□□□□□ -1.31
USP48-202ENST00000374730 SNX11Q9Y5W9 270 aa6.89□□□□□ -1.31
USP48-202ENST00000374730 FGD6Q6ZV73 1430 aa6.89□□□□□ -1.31
USP48-202ENST00000374730 ITGB5P18084 799 aa6.88□□□□□ -1.31
USP48-202ENST00000374730 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.88□□□□□ -1.31
USP48-202ENST00000374730 SPRED2Q7Z698 418 aa6.88□□□□□ -1.31
USP48-202ENST00000374730 HRASLS5Q96KN8 279 aa6.88□□□□□ -1.31
USP48-202ENST00000374730 PLAGL2Q9UPG8 496 aa6.88□□□□□ -1.31
USP48-202ENST00000374730 MAPK8IP1Q9UQF2 711 aa6.88□□□□□ -1.31
USP48-202ENST00000374730 KIAA0556O60303 1618 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 NCOA2Q15596 1464 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 MYOM3Q5VTT5 1437 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 KRTAP9-6A0A140TA67 174 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 EOMESO95936 686 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 FUT4P22083 530 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 ITGAEP38570 1179 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 TXKP42681 527 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 SLBPQ14493 270 aaKnown RBP eCLIP6.87□□□□□ -1.31
USP48-202ENST00000374730 PLCL1Q15111 1095 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 TAF1CQ15572 869 aaPredicted RBP6.87□□□□□ -1.31
USP48-202ENST00000374730 CCDC27Q2M243 656 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 CRELD1Q96HD1 420 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 KRTAP4-12Q9BQ66 201 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 FOXQ1Q9C009 403 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 MIR1-1HGQ9H1L0 117 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 FBRSQ9HAH7 460 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 PCDHB5Q9Y5E4 795 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 GCC2Q8IWJ2 1684 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 PTPN23Q9H3S7 1636 aa6.87□□□□□ -1.31
USP48-202ENST00000374730 MTUS2Q5JR59 1369 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 USP31Q70CQ4 1352 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 CTSHP09668 335 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 CD8BP10966 210 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 JUNBP17275 347 aaPredicted RBP6.86□□□□□ -1.31
USP48-202ENST00000374730 ITIH2P19823 946 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 ETF1P62495 437 aaKnown RBP6.86□□□□□ -1.31
USP48-202ENST00000374730 BNIP3Q12983 259 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 SEPT6Q14141 434 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 C22orf34Q6ZV56 151 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 HID1Q8IV36 788 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 SPACA3Q8IXA5 215 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 MFSD2AQ8NA29 543 aa6.86□□□□□ -1.31
USP48-202ENST00000374730 PRDM5Q9NQX1 630 aaPredicted RBP6.86□□□□□ -1.31
USP48-202ENST00000374730 RNF114Q9Y508 228 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms