RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SEC23AQ15436 765 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 DIXDC1Q155Q3 683 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 EARS2Q5JPH6 523 aaKnown RBP11.9□□□□□ -0.5
LIMA1-201ENST00000341247 TMC6Q7Z403 805 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 CATIPQ7Z7H3 387 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 DZIP1Q86YF9 867 aaKnown RBP11.9□□□□□ -0.5
LIMA1-201ENST00000341247 KLHL34Q8N239 644 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 SHISA4Q96DD7 197 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 MYH13Q9UKX3 1938 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 POLR2DO15514 142 aaKnown RBP11.9□□□□□ -0.5
LIMA1-201ENST00000341247 USP17L8P0C7I0 530 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 SKILP12757 684 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 NFIXQ14938 502 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.9□□□□□ -0.5
LIMA1-201ENST00000341247 FBXO33Q7Z6M2 555 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 LRRC8AQ8IWT6 810 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 KRI1Q8N9T8 703 aaKnown RBP11.9□□□□□ -0.5
LIMA1-201ENST00000341247 MCM9Q9NXL9 1143 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 GRIK5Q16478 980 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 FAM196AQ6ZSG2 479 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 METTL16Q86W50 562 aaKnown RBP11.9□□□□□ -0.5
LIMA1-201ENST00000341247 FOXP4Q8IVH2 680 aaPredicted RBP11.9□□□□□ -0.5
LIMA1-201ENST00000341247 TMTC2Q8N394 836 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 NYXQ9GZU5 481 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 PCDHA5Q9Y5H7 936 aa11.9□□□□□ -0.5
LIMA1-201ENST00000341247 ZNF831Q5JPB2 1677 aa11.9□□□□□ -0.51
LIMA1-201ENST00000341247 PPP6R2O75170 966 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 VEGFAP15692 232 aaPredicted RBP11.89□□□□□ -0.51
LIMA1-201ENST00000341247 DYNLL2Q96FJ2 89 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 DCP1AQ9NPI6 582 aaPredicted RBP11.89□□□□□ -0.51
LIMA1-201ENST00000341247 TSPY2A6NKD2 308 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 RIOK3O14730 519 aaKnown RBP11.89□□□□□ -0.51
LIMA1-201ENST00000341247 RESP18Q5W5W9 173 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 SARM1Q6SZW1 724 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 MRFAP1L1Q96HT8 127 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 SERTAD1Q9UHV2 236 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 COL24A1Q17RW2 1714 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 CNTNAP4Q9C0A0 1308 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 WNT7AO00755 349 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 PRR29P0C7W0 189 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 GOLGA8FQ08AF8 430 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 GOLGA8DPQ0D2H9 430 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 MYRIPQ8NFW9 859 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 STK36Q9NRP7 1315 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 MYH2Q9UKX2 1941 aa11.89□□□□□ -0.51
LIMA1-201ENST00000341247 CUTAO60888 179 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 TNNT1P13805 278 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 CASP1P29466 404 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 ZNF174Q15697 407 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 CRNKL1Q9BZJ0 848 aaKnown RBP11.88□□□□□ -0.51
LIMA1-201ENST00000341247 HPSEQ9Y251 543 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 NHSQ6T4R5 1651 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 TERF1P54274 439 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 MEX3CQ5U5Q3 659 aaKnown RBP11.88□□□□□ -0.51
LIMA1-201ENST00000341247 KRBA2Q6ZNG9 492 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 LY75O60449 1722 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 AFMP43652 599 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 USP5P45974 858 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 SLC10A5Q5PT55 438 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 TRAPPC3LQ5T215 181 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 TRMT44Q8IYL2 757 aaKnown RBP11.88□□□□□ -0.51
LIMA1-201ENST00000341247 STAMQ92783 540 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 SAP30BPQ9UHR5 308 aaKnown RBP11.88□□□□□ -0.51
LIMA1-201ENST00000341247 IRS2Q9Y4H2 1338 aa11.88□□□□□ -0.51
LIMA1-201ENST00000341247 PCNTO95613 3336 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 SERPINC1P01008 464 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 NCAPHQ15003 741 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 PKN1Q16512 942 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 SLC44A5Q8NCS7 719 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 DPF2Q92785 391 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 CSRNP2Q9H175 543 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 PDE4BQ07343 736 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 DHX58Q96C10 678 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 EPSTI1Q96J88 318 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 BRIP1Q9BX63 1249 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 FBXO2Q9UK22 296 aaPredicted RBP11.87□□□□□ -0.51
LIMA1-201ENST00000341247 DYNC1I1O14576 645 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 ADAMTS3O15072 1205 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 RRP9O43818 475 aaKnown RBP11.87□□□□□ -0.51
LIMA1-201ENST00000341247 HSPA1LP34931 641 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 TPM4P67936 248 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 RILPL1Q5EBL4 403 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 ANKRD2Q9GZV1 360 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 TIAM2Q8IVF5 1701 aa11.87□□□□□ -0.51
LIMA1-201ENST00000341247 RBM6P78332 1123 aaKnown RBP11.86□□□□□ -0.51
LIMA1-201ENST00000341247 FANCCQ00597 558 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 TROAPQ12815 778 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 CFAP100Q494V2 611 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 OLFM4Q6UX06 510 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 SRBD1Q8N5C6 995 aaKnown RBP11.86□□□□□ -0.51
LIMA1-201ENST00000341247 CNBD1Q8NA66 436 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 CTCFLQ8NI51 663 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-201ENST00000341247 FOXP1Q9H334 677 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-201ENST00000341247 FANCLQ9NW38 375 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 ANAPC4Q9UJX5 808 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 CDC25BP30305 580 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 PRIMPOLQ96LW4 560 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.86□□□□□ -0.51
LIMA1-201ENST00000341247 XBP1P17861 261 aa11.86□□□□□ -0.51
LIMA1-201ENST00000341247 BMP6P22004 513 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms