RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 TNPO1Q92973 898 aaKnown RBP20.3■□□□□ 0.84
CLDN4-201ENST00000340958 DDX11Q96FC9 970 aa20.3■□□□□ 0.84
CLDN4-201ENST00000340958 GMLQ99445 158 aa20.3■□□□□ 0.84
CLDN4-201ENST00000340958 TRIM34Q9BYJ4 488 aa20.3■□□□□ 0.84
CLDN4-201ENST00000340958 SENP2Q9HC62 589 aa20.3■□□□□ 0.84
CLDN4-201ENST00000340958 MYO1BO43795 1136 aa20.29■□□□□ 0.84
CLDN4-201ENST00000340958 CDK8P49336 464 aa20.29■□□□□ 0.84
CLDN4-201ENST00000340958 CPLX2Q6PUV4 134 aaKnown RBP20.29■□□□□ 0.84
CLDN4-201ENST00000340958 APOA5Q6Q788 366 aa20.29■□□□□ 0.84
CLDN4-201ENST00000340958 CCDC144CPQ8IYA2 1237 aa20.29■□□□□ 0.84
CLDN4-201ENST00000340958 KIF3AQ9Y496 699 aa20.29■□□□□ 0.84
CLDN4-201ENST00000340958 WDR33Q9C0J8 1336 aaKnown RBP20.28■□□□□ 0.84
CLDN4-201ENST00000340958 IQCA1LA6NCM1 817 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 GOLGA8AA7E2F4 631 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 JAK2O60674 1132 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 RXRAP19793 462 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 PDCP20941 246 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 LARP1BQ659C4 914 aaKnown RBP20.28■□□□□ 0.84
CLDN4-201ENST00000340958 NUP133Q8WUM0 1156 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 GBP4Q96PP9 640 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 MYL10Q9BUA6 226 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 IDI2Q9BXS1 227 aa20.28■□□□□ 0.84
CLDN4-201ENST00000340958 PTPDC1A2A3K4 754 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 SPDYE2BA6NHP3 402 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 TOMM70O94826 608 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 SPDYE6P0CI01 402 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 HMGN5P82970 282 aaKnown RBP20.27■□□□□ 0.84
CLDN4-201ENST00000340958 NFKBIBQ15653 356 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 CATIPQ7Z7H3 387 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 CRACR2BQ8N4Y2 399 aaPredicted RBP20.27■□□□□ 0.84
CLDN4-201ENST00000340958 ENAHQ8N8S7 591 aaPredicted RBP20.27■□□□□ 0.84
CLDN4-201ENST00000340958 DHX36Q9H2U1 1008 aaKnown RBP20.27■□□□□ 0.84
CLDN4-201ENST00000340958 SERPINB13Q9UIV8 391 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 HACL1Q9UJ83 578 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 STX6O43752 255 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 RPS12P25398 132 aaKnown RBP20.27■□□□□ 0.84
CLDN4-201ENST00000340958 GMPSP49915 693 aaPredicted RBP20.27■□□□□ 0.84
CLDN4-201ENST00000340958 CCDC178Q5BJE1 867 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 TAF1DQ9H5J8 278 aaPredicted RBP20.27■□□□□ 0.84
CLDN4-201ENST00000340958 HPS5Q9UPZ3 1129 aa20.27■□□□□ 0.84
CLDN4-201ENST00000340958 CDK5RAP2Q96SN8 1893 aa20.27■□□□□ 0.83
CLDN4-201ENST00000340958 MYH1P12882 1939 aa20.26■□□□□ 0.83
CLDN4-201ENST00000340958 CLRN2A0PK11 232 aa20.26■□□□□ 0.83
CLDN4-201ENST00000340958 NMT2O60551 498 aa20.26■□□□□ 0.83
CLDN4-201ENST00000340958 CDKL5O76039 1030 aa20.26■□□□□ 0.83
CLDN4-201ENST00000340958 SYT1P21579 422 aa20.26■□□□□ 0.83
CLDN4-201ENST00000340958 C1QTNF8P60827 252 aa20.26■□□□□ 0.83
CLDN4-201ENST00000340958 SWAP70Q9UH65 585 aa20.26■□□□□ 0.83
CLDN4-201ENST00000340958 VPS37CA5D8V6 355 aaPredicted RBP20.25■□□□□ 0.83
CLDN4-201ENST00000340958 EPS15P42566 896 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 SEC23AQ15436 765 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 ZNF654Q8IZM8 581 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 NSUN7Q8NE18 718 aaKnown RBP20.25■□□□□ 0.83
CLDN4-201ENST00000340958 VEZTQ9HBM0 779 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 TCP10L2B9ZVM9 353 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 PPFIA3O75145 1194 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 POTEIP0CG38 1075 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 POTEJP0CG39 1038 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 PDIA4P13667 645 aaKnown RBP20.25■□□□□ 0.83
CLDN4-201ENST00000340958 RASA1P20936 1047 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 LMOD1P29536 600 aaPredicted RBP20.25■□□□□ 0.83
CLDN4-201ENST00000340958 EPHX2P34913 555 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 RBM26Q5T8P6 1007 aaKnown RBP20.25■□□□□ 0.83
CLDN4-201ENST00000340958 ZFPM1Q8IX07 1006 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 MYOZ2Q9NPC6 264 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 GPRC5DQ9NZD1 345 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 PI4KBQ9UBF8 816 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 FAM198AQ9UFP1 575 aa20.25■□□□□ 0.83
CLDN4-201ENST00000340958 FOCADQ5VW36 1801 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 CCDC196A0A1B0GTZ2 297 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 H3BQV1 296 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 ENTPD3O75355 529 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 NPM3O75607 178 aaKnown RBP20.24■□□□□ 0.83
CLDN4-201ENST00000340958 BRD1O95696 1058 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 MMP14P50281 582 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 RTN1Q16799 776 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 IFFO2Q5TF58 517 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 RBM46Q8TBY0 533 aaKnown RBP20.24■□□□□ 0.83
CLDN4-201ENST00000340958 KAT14Q9H8E8 782 aa20.24■□□□□ 0.83
CLDN4-201ENST00000340958 ZNF70Q9UC06 446 aaPredicted RBP20.24■□□□□ 0.83
CLDN4-201ENST00000340958 CTDNEP1O95476 244 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 SMARCC2Q8TAQ2 1214 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 STX8Q9UNK0 236 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 SHTN1A0MZ66 631 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 CALM1P0DP23 149 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 CALM2P0DP24 149 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 CALM3P0DP25 149 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 ADD1P35611 737 aaKnown RBP20.23■□□□□ 0.83
CLDN4-201ENST00000340958 DGKHQ86XP1 1220 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 MTMR14Q8NCE2 650 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 ZDHHC9Q9Y397 364 aa20.23■□□□□ 0.83
CLDN4-201ENST00000340958 DDX60LQ5H9U9 1706 aaKnown RBP20.22■□□□□ 0.83
CLDN4-201ENST00000340958 ECM29Q5VYK3 1845 aa20.22■□□□□ 0.83
CLDN4-201ENST00000340958 DDTLA6NHG4 134 aaPredicted RBP20.22■□□□□ 0.83
CLDN4-201ENST00000340958 ZSCAN22P10073 491 aaPredicted RBP20.22■□□□□ 0.83
CLDN4-201ENST00000340958 EAPPQ56P03 285 aaPredicted RBP20.22■□□□□ 0.83
CLDN4-201ENST00000340958 MICALL2Q8IY33 904 aa20.22■□□□□ 0.83
CLDN4-201ENST00000340958 GOLGA6L22H0YM25 854 aa20.21■□□□□ 0.83
CLDN4-201ENST00000340958 MPHOSPH10O00566 681 aaKnown RBP20.21■□□□□ 0.83
CLDN4-201ENST00000340958 FOSBP53539 338 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms