RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 CUTAO60888 179 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 LMOD1P29536 600 aaPredicted RBP6.11□□□□□ -1.43
PTPRB-202ENST00000334414 PLCB3Q01970 1234 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 ICE2Q659A1 982 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 SAMD1Q6SPF0 538 aaPredicted RBP6.11□□□□□ -1.43
PTPRB-202ENST00000334414 KLHDC4Q8TBB5 520 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 N4BP2L2Q92802 583 aaPredicted RBP6.11□□□□□ -1.43
PTPRB-202ENST00000334414 PRAM1Q96QH2 718 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 TPCN1Q9ULQ1 816 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 CCDC151A5D8V7 595 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 PCYT1AP49585 367 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 AMOTL2Q9Y2J4 779 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 C10orf76Q5T2E6 689 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 RGS22Q8NE09 1264 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 FAM204AQ9H8W3 233 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 CTNND2Q9UQB3 1225 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 SDSP20132 328 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 RPS6KA1Q15418 735 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 SPDL1Q96EA4 605 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 RNF216Q9NWF9 866 aaPredicted RBP6.11□□□□□ -1.43
PTPRB-202ENST00000334414 ANGPTL3Q9Y5C1 460 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 TTC36A6NLP5 189 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 SPOPO43791 374 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 SMTNP53814 917 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 KRT71Q3SY84 523 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 NDE1Q9NXR1 346 aa6.11□□□□□ -1.43
PTPRB-202ENST00000334414 PFDN6O15212 129 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 ARHGEF9O43307 516 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 NCBP1Q09161 790 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 SAAL1Q96ER3 474 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 CDC5LQ99459 802 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 BATF3Q9NR55 127 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 ABCA5Q8WWZ7 1642 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 KLF18A0A0U1RQI7 1052 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 PYGBP11216 843 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 ABCD1P33897 745 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 MCM7P33993 719 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 NOP14P78316 857 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 NR1H3Q13133 447 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 TEDDM1Q5T9Z0 273 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 TEKT1Q969V4 418 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 KDM3AQ9Y4C1 1321 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 RBM5P52756 815 aaKnown RBP eCLIP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 FANCCQ00597 558 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 OGFOD1Q8N543 542 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 ZNF189O75820 626 aaPredicted RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 TEX9Q8N6V9 391 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 PAWRQ96IZ0 340 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 DDX41Q9UJV9 622 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 NUTM2FA1L443 756 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 HARSP12081 509 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 KRT5P13647 590 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 GLE1Q53GS7 698 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 NUTM2GQ5VZR2 741 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 CCDC25Q86WR0 208 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 TMCO5AQ8N6Q1 288 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 TRIM11Q96F44 468 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 COL17A1Q9UMD9 1497 aaPredicted RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 ARHGAP10A1A4S6 786 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 KRT15P19012 456 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 DTHD1Q6ZMT9 781 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 CTAGE3PQ8IX95 158 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 BCAS4Q8TDM0 211 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 TMOD4Q9NZQ9 345 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 GEN1Q17RS7 908 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 CATSPER1Q8NEC5 780 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 AFMP43652 599 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 SFMBT2Q5VUG0 894 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 GRAMD4Q6IC98 578 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 RIC8AQ9NPQ8 531 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 PPP1R12AO14974 1030 aaPredicted RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 KARSQ15046 597 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 C6orf118Q5T5N4 469 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 Q6ZUG5 572 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 FNBP4Q8N3X1 1017 aaPredicted RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 PAIP2BQ9ULR5 123 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 DIS3Q9Y2L1 958 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 SOS2Q07890 1332 aaPredicted RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 SERPINB10P48595 397 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 NEK2P51955 445 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 CCT2P78371 535 aaKnown RBP6.1□□□□□ -1.43
PTPRB-202ENST00000334414 LRGUKQ96M69 825 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 ABCC5O15440 1437 aa6.1□□□□□ -1.43
PTPRB-202ENST00000334414 PTPDC1A2A3K4 754 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 SPDYE3A6NKU9 549 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 KPNA2P52292 529 aaKnown RBP6.09□□□□□ -1.43
PTPRB-202ENST00000334414 BABAM1Q9NWV8 329 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 AMFRQ9UKV5 643 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 MINDY4BA8MYZ0 360 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 TSPY3P0CV98 308 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 TSPY8P0CW00 308 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 TMEM60Q9H2L4 133 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 COPG1Q9Y678 874 aaKnown RBP6.09□□□□□ -1.43
PTPRB-202ENST00000334414 DKC1O60832 514 aaKnown RBP eCLIP6.09□□□□□ -1.43
PTPRB-202ENST00000334414 BRF1Q92994 677 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 FAM8A1Q9UBU6 413 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 HDAC4P56524 1084 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 C20orf194Q5TEA3 1177 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 CDAN1Q8IWY9 1227 aa6.09□□□□□ -1.43
PTPRB-202ENST00000334414 CCDC105Q8IYK2 499 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms