RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 ADGRG1Q9Y653 693 aa8.96□□□□□ -0.97
VMA21-201ENST00000330374 RANBP6O60518 1105 aaKnown RBP8.96□□□□□ -0.98
VMA21-201ENST00000330374 DHX37Q8IY37 1157 aaKnown RBP8.96□□□□□ -0.98
VMA21-201ENST00000330374 DIS3L2Q8IYB7 885 aaKnown RBP8.96□□□□□ -0.98
VMA21-201ENST00000330374 CAPZA3Q96KX2 299 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 MED15Q96RN5 788 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 CDC23Q9UJX2 597 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 PCDHB6Q9Y5E3 794 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 HEG1Q9ULI3 1381 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 PPP6R2O75170 966 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 CTDSPL2Q05D32 466 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 SLC20A2Q08357 652 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 ARHGEF25Q86VW2 580 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 RIN2Q8WYP3 895 aaPredicted RBP8.96□□□□□ -0.98
VMA21-201ENST00000330374 UPF1Q92900 1129 aaKnown RBP eCLIP8.96□□□□□ -0.981e-7■■■□□ 16.2
VMA21-201ENST00000330374 SLF1Q9BQI6 1058 aa8.96□□□□□ -0.98
VMA21-201ENST00000330374 CTAGE15A4D2H0 777 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 IFIT3O14879 490 aaKnown RBP8.95□□□□□ -0.98
VMA21-201ENST00000330374 CDKL5O76039 1030 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 CTAGE8P0CG41 777 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 CABP4P57796 275 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 CASP8Q14790 479 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 SAFBQ15424 915 aaKnown RBP eCLIP8.95□□□□□ -0.98
VMA21-201ENST00000330374 CTAGE6Q86UF2 777 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 CTAGE4Q8IX94 777 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 GOLGA6L1Q8N7Z2 621 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 VPS16Q9H269 839 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 FAM204AQ9H8W3 233 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 GUCA1BQ9UMX6 200 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 MAPK8IP1Q9UQF2 711 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 ZMYM6O95789 1325 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 SSRP1Q08945 709 aaKnown RBP8.95□□□□□ -0.98
VMA21-201ENST00000330374 TRIM10Q9UDY6 481 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 SLIT1O75093 1534 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 LTN1O94822 1766 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 TATP17735 454 aaPredicted RBP8.95□□□□□ -0.98
VMA21-201ENST00000330374 CHRNA2Q15822 529 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 FKBP15Q5T1M5 1219 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 GSPT2Q8IYD1 628 aaKnown RBP8.95□□□□□ -0.98
VMA21-201ENST00000330374 CEP112Q8N8E3 955 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 APPBP2Q92624 585 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 DRC1Q96MC2 740 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 NUP88Q99567 741 aaPredicted RBP8.95□□□□□ -0.98
VMA21-201ENST00000330374 AKAP2Q9Y2D5 859 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 SLC12A7Q9Y666 1083 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 RFX7Q2KHR2 1363 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 UBN2Q6ZU65 1347 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 GTF2A1P52655 376 aaPredicted RBP8.95□□□□□ -0.98
VMA21-201ENST00000330374 CASP7P55210 303 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 PLBD2Q8NHP8 589 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 CABP5Q9NP86 173 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 HDAC6Q9UBN7 1215 aa8.95□□□□□ -0.98
VMA21-201ENST00000330374 FAM205CA6NFA0 338 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 MAP2K7O14733 419 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 FXR1P51114 621 aaKnown RBP eCLIP8.94□□□□□ -0.98
VMA21-201ENST00000330374 NOSTRINQ8IVI9 506 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 OXER1Q8TDS5 423 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 FAM89AQ96GI7 184 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 EPSTI1Q96J88 318 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 NBPF3Q9H094 633 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 MED1Q15648 1581 aaPredicted RBP8.94□□□□□ -0.98
VMA21-201ENST00000330374 LRRIQ3A6PVS8 624 aaPredicted RBP8.94□□□□□ -0.98
VMA21-201ENST00000330374 SRGAP2O75044 1071 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 PSEN1P49768 467 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 SYNE4Q8N205 404 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 CSRNP2Q9H175 543 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 DACH1Q9UI36 760 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 EIF3CLB5ME19 914 aaKnown RBP8.94□□□□□ -0.98
VMA21-201ENST00000330374 DPYSL4O14531 572 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 PHKG2P15735 406 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 ZNF18P17022 549 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 TOB1P50616 345 aaPredicted RBP8.94□□□□□ -0.98
VMA21-201ENST00000330374 MRPS25P82663 173 aaKnown RBP8.94□□□□□ -0.98
VMA21-201ENST00000330374 NR1I3Q14994 352 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 MLKLQ8NB16 471 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 CABLES1Q8TDN4 633 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 EEF2KMTQ96G04 330 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 EIF3CQ99613 913 aaKnown RBP8.94□□□□□ -0.98
VMA21-201ENST00000330374 BLZF1Q9H2G9 400 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 L1RE1Q9UN81 338 aa8.94□□□□□ -0.98
VMA21-201ENST00000330374 NBPF26B4DH59 902 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 SH2B2O14492 632 aaPredicted RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 CD44P16070 742 aaKnown RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 IRX3P78415 501 aaPredicted RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 TTC31Q49AM3 519 aaPredicted RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 NOM1Q5C9Z4 860 aaKnown RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 NBPF14Q5TI25 921 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 NBPF10Q6P3W6 841 aaKnown RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 NBPF15Q8N660 670 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 ENOX1Q8TC92 643 aaKnown RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 CTNND2Q9UQB3 1225 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 SYNRGQ9UMZ2 1314 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 N4BP3O15049 544 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 MDM2Q00987 491 aaPredicted RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 FILIP1LQ4L180 1135 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 METTL24Q5JXM2 366 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 PACS2Q86VP3 889 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 THEMISQ8N1K5 641 aaPredicted RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 NAPGQ99747 312 aaPredicted RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 TAB2Q9NYJ8 693 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms