RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 PPP2R5BQ15173 497 aa10.6□□□□□ -0.71
TMEM39A-201ENST00000319172 KANK3Q6NY19 840 aa10.6□□□□□ -0.71
TMEM39A-201ENST00000319172 GAS2L3Q86XJ1 694 aa10.6□□□□□ -0.71
TMEM39A-201ENST00000319172 SLC44A5Q8NCS7 719 aa10.6□□□□□ -0.71
TMEM39A-201ENST00000319172 USP17L3A6NCW0 530 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 USP17L4A6NCW7 530 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 KLRF2D3W0D1 207 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 UVSSAQ2YD98 709 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 TTC38Q5R3I4 469 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 DTHD1Q6ZMT9 781 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 USP17L1Q7RTZ2 530 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 TMC6Q7Z403 805 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 FCHSD1Q86WN1 690 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 KCNH3Q9ULD8 1083 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 NR1I2O75469 434 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 STX17P56962 302 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 FNBP4Q8N3X1 1017 aaPredicted RBP10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 SPDYE3A6NKU9 549 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 POLR2DO15514 142 aaKnown RBP10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 TOP1P11387 765 aaKnown RBP10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 GRM1Q13255 1194 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 RRAGBQ5VZM2 374 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 NOSTRINQ8IVI9 506 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 CLIC4Q9Y696 253 aa10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 MED1Q15648 1581 aaPredicted RBP10.59□□□□□ -0.71
TMEM39A-201ENST00000319172 WDHD1O75717 1129 aaPredicted RBP10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 ZNF202O95125 648 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 STAMQ92783 540 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 BRIP1Q9BX63 1249 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 COA1Q9GZY4 146 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 ZDHHC9Q9Y397 364 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 SAMM50Q9Y512 469 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 NMT2O60551 498 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 CAVIN2O95810 425 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 CHMP4BP1P59074 171 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 MB21D2Q8IYB1 491 aaPredicted RBP10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 CLSTN2Q9H4D0 955 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 DCP1AQ9NPI6 582 aaPredicted RBP10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 RFX7Q2KHR2 1363 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 ZNF445P59923 1031 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 TNIP1Q15025 636 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 USH1GQ495M9 461 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 TTC12Q9H892 705 aaPredicted RBP10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 CLIC6Q96NY7 704 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 ELP1O95163 1332 aa10.58□□□□□ -0.72
TMEM39A-201ENST00000319172 GYS1P13807 737 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 MRPL12P52815 198 aaKnown RBP10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 ASIC1P78348 528 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 NR5A1Q13285 461 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 CERKLQ49MI3 558 aaPredicted RBP10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 SERPINB13Q9UIV8 391 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 NWD1Q149M9 1564 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 LTN1O94822 1766 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 CCNT1O60563 726 aaKnown RBP10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 YEATS4O95619 227 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 LIFRP42702 1097 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 CCDC186Q7Z3E2 898 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 LRP10Q7Z4F1 713 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 TTLL6Q8N841 843 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 ZNHIT6Q9NWK9 470 aaKnown RBP10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 TRMT1Q9NXH9 659 aaKnown RBP10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 PCDHA7Q9UN72 937 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 CLEC11AQ9Y240 323 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 SCG2P13521 617 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 AMPD3Q01432 767 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 PLS1Q14651 629 aa10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 NSUN4Q96CB9 384 aaKnown RBP10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.57□□□□□ -0.72
TMEM39A-201ENST00000319172 SMCO2A6NFE2 343 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 MYCNP04198 464 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 IBSPP21815 317 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 TXKP42681 527 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 CPXCR1Q8N123 301 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 IQUBQ8NA54 791 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 MNS1Q8NEH6 495 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 TBC1D16Q8TBP0 767 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 WTIPA6NIX2 430 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 FAM196BA6NMK8 535 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 CUTAO60888 179 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 PCP11498 1178 aaKnown RBP10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 TXNRD3Q86VQ6 643 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 TICAM2Q86XR7 235 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 RASGRP4Q8TDF6 673 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 STAG1Q8WVM7 1258 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 ARHGEF10LQ9HCE6 1279 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 BIN2Q9UBW5 565 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 GDF11O95390 407 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 IFNAR1P17181 557 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 UBASH3AP57075 661 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 AOC3Q16853 763 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 TSGA10IPQ3SY00 556 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 USP17L2Q6R6M4 530 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 DEFB132Q7Z7B7 95 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 TRIM47Q96LD4 638 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 PYM1Q9BRP8 204 aaKnown RBP10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 EHMT1Q9H9B1 1298 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 EXOC1Q9NV70 894 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 DDAH1O94760 285 aa10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 ECM2O94769 699 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-201ENST00000319172 PLEKHA8P1O95397 391 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms