RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TNRQ92752 1358 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 RNF169Q8NCN4 708 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 FAM193BQ96PV7 902 aaPredicted RBP13.35□□□□□ -0.27
PCF11-201ENST00000298281 KCNG1Q9UIX4 513 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 DENND2AQ9ULE3 1009 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 EXOC7Q9UPT5 735 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 FAM83GA6ND36 823 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 KIF11P52732 1056 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 USTQ9Y2C2 406 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 NESP48681 1621 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 PRPF6O94906 941 aaKnown RBP13.35□□□□□ -0.27
PCF11-201ENST00000298281 PPP2R5AQ15172 486 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 MAEAQ7L5Y9 396 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 HDXQ7Z353 690 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 FAM8A1Q9UBU6 413 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 ORC6Q9Y5N6 252 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 VPS41P49754 854 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 SLC7A5P2Q9GIP4 190 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 OPHN1O60890 802 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 MYL5Q02045 173 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 LIN9Q5TKA1 542 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 MAGEB6Q8N7X4 407 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 IL2RBP14784 551 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 PPARDQ03181 441 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 NMIQ13287 307 aaPredicted RBP13.34□□□□□ -0.27
PCF11-201ENST00000298281 NBPF14Q5TI25 921 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 NBPF3Q9H094 633 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 HELLSQ9NRZ9 838 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 SAT1P21673 171 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 CLCN1P35523 988 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 ZBTB33Q86T24 672 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.34□□□□□ -0.27
PCF11-201ENST00000298281 FAM76AQ8TAV0 307 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 GANCQ8TET4 914 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 AKR1B15C9JRZ8 316 aaPredicted RBP13.34□□□□□ -0.27
PCF11-201ENST00000298281 GIGYF1O75420 1035 aaPredicted RBP13.34□□□□□ -0.27
PCF11-201ENST00000298281 TMEM87BQ96K49 555 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 ZKSCAN3Q9BRR0 538 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 TRAIPQ9BWF2 469 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 TRIM55Q9BYV6 548 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 ANAPC5Q9UJX4 755 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 MAST3O60307 1309 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 PPP2R5BQ15173 497 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 B4GALNT4Q76KP1 1039 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 ARHGAP24Q8N264 748 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 WDR48Q8TAF3 677 aa13.34□□□□□ -0.27
PCF11-201ENST00000298281 NSFL1CQ9UNZ2 370 aaKnown RBP13.34□□□□□ -0.27
PCF11-201ENST00000298281 FANCAO15360 1455 aa13.33□□□□□ -0.27
PCF11-201ENST00000298281 PFDN6O15212 129 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 TBC1D8O95759 1140 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 CHRNA2Q15822 529 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 CREB3L3Q68CJ9 461 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 ARHGEF10LQ9HCE6 1279 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 UBN1Q9NPG3 1134 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 WDR7Q9Y4E6 1490 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 UBL4BQ8N7F7 174 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 NUP58Q9BVL2 599 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 ABCF3Q9NUQ8 709 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 PRKAG2Q9UGJ0 569 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 SLC12A1Q13621 1099 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 FBXO31Q5XUX0 539 aaPredicted RBP13.33□□□□□ -0.28
PCF11-201ENST00000298281 GIMAP4Q9NUV9 329 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 SLC13A4Q9UKG4 626 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 IQSEC3Q9UPP2 1182 aaPredicted RBP13.33□□□□□ -0.28
PCF11-201ENST00000298281 ABCA10Q8WWZ4 1543 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 FLT4P35916 1363 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 IRS4O14654 1257 aaPredicted RBP13.33□□□□□ -0.28
PCF11-201ENST00000298281 RIMBP2O15034 1052 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 ZNF277Q9NRM2 450 aaPredicted RBP13.33□□□□□ -0.28
PCF11-201ENST00000298281 MMEL1Q495T6 779 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 EAPPQ56P03 285 aaPredicted RBP13.33□□□□□ -0.28
PCF11-201ENST00000298281 CCDC68Q9H2F9 335 aa13.33□□□□□ -0.28
PCF11-201ENST00000298281 PTPDC1A2A3K4 754 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 TRAF5O00463 557 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 DNAJC8O75937 253 aaPredicted RBP13.32□□□□□ -0.28
PCF11-201ENST00000298281 ANXA1P04083 346 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 DBN1Q16643 649 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 S100BP04271 92 aaPredicted RBP13.32□□□□□ -0.28
PCF11-201ENST00000298281 SF3A3Q12874 501 aaKnown RBP eCLIP13.32□□□□□ -0.28
PCF11-201ENST00000298281 DCAF5Q96JK2 942 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 LLPHQ9BRT6 129 aaKnown RBP13.32□□□□□ -0.28
PCF11-201ENST00000298281 SYTL2Q9HCH5 934 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 CALUO43852 315 aaPredicted RBP13.32□□□□□ -0.28
PCF11-201ENST00000298281 TSNAXIP1Q2TAA8 658 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 DCUN1D2Q6PH85 259 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 N4BP2L2Q92802 583 aaPredicted RBP13.32□□□□□ -0.28
PCF11-201ENST00000298281 IGHDP01880 384 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 RNASE9P60153 205 aaKnown RBP13.32□□□□□ -0.28
PCF11-201ENST00000298281 SND1Q7KZF4 910 aaKnown RBP eCLIP13.32□□□□□ -0.28
PCF11-201ENST00000298281 MRPL50Q8N5N7 158 aaKnown RBP13.32□□□□□ -0.28
PCF11-201ENST00000298281 HDAC11Q96DB2 347 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 LGSNQ5TDP6 509 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 DCTPP1Q9H773 170 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 ZNF365Q70YC5 407 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 IFNKQ9P0W0 207 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 PLCH2O75038 1416 aa13.32□□□□□ -0.28
PCF11-201ENST00000298281 CAPN9O14815 690 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 DEXIO95424 95 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 NUP160Q12769 1436 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 NVLO15381 856 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms