RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 IRX4P78413 519 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 APOEP02649 317 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 SERPINB6P35237 376 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 LONRF3Q496Y0 759 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 SCYL2Q6P3W7 929 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 LRGUKQ96M69 825 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 SMYD2Q9NRG4 433 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 TNNI1P19237 187 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 TBC1D8BQ0IIM8 1120 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 ANAPC5Q9UJX4 755 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 EMILIN1Q9Y6C2 1016 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 BCRP11274 1271 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 TRIM27P14373 513 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 XPAP23025 273 aaPredicted RBP12.59□□□□□ -0.39
PTPN4-201ENST00000263708 IGSF3O75054 1194 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 ZRANB1Q9UGI0 708 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 SYNRGQ9UMZ2 1314 aa12.58□□□□□ -0.39
PTPN4-201ENST00000263708 STAM2O75886 525 aa12.58□□□□□ -0.39
PTPN4-201ENST00000263708 PLEKHA4Q9H4M7 779 aa12.58□□□□□ -0.39
PTPN4-201ENST00000263708 ECE1P42892 770 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 TCIRG1Q13488 830 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 ANKRD42Q8N9B4 389 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 IGSF22Q8N9C0 903 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 SMCR8Q8TEV9 937 aaPredicted RBP12.58□□□□□ -0.4
PTPN4-201ENST00000263708 HECW1Q76N89 1606 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 ABCC11Q96J66 1382 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 SESTD1Q86VW0 696 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 HELBQ8NG08 1087 aaPredicted RBP12.58□□□□□ -0.4
PTPN4-201ENST00000263708 XAGE3Q8WTP9 111 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 IPO11Q9UI26 975 aaKnown RBP12.58□□□□□ -0.4
PTPN4-201ENST00000263708 EVCP57679 992 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 RASSF2P50749 326 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 WHAMMP3Q1A5X7 153 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 SYNJ2BP-COX16A0A087WUM0 186 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 MAFGO15525 162 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 C20orf194Q5TEA3 1177 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 TPTE2Q6XPS3 522 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 FAM71BQ8TC56 605 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 COX16Q9P0S2 106 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 LRRC9Q6ZRR7 1453 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 SLC4A1P02730 911 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 NMIQ13287 307 aaPredicted RBP12.58□□□□□ -0.4
PTPN4-201ENST00000263708 MMS19Q96T76 1030 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 ABCF3Q9NUQ8 709 aa12.58□□□□□ -0.4
PTPN4-201ENST00000263708 NVLO15381 856 aaKnown RBP12.57□□□□□ -0.4
PTPN4-201ENST00000263708 CEP104O60308 925 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 ARHGAP4P98171 946 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 CCDC13Q8IYE1 715 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 PLCD1P51178 756 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 DZIP3Q86Y13 1208 aaKnown RBP12.57□□□□□ -0.4
PTPN4-201ENST00000263708 TEX11Q8IYF3 940 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 F13A1P00488 732 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 NOP14P78316 857 aaKnown RBP12.57□□□□□ -0.4
PTPN4-201ENST00000263708 POTEDQ86YR6 584 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 PHBP35232 272 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 NME8Q8N427 588 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 ANGPTL3Q9Y5C1 460 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 TUBB4AP04350 444 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 CPXCR1Q8N123 301 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 UBN1Q9NPG3 1134 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 DKC1O60832 514 aaKnown RBP eCLIP12.57□□□□□ -0.44e-7■■■■■ 56.9
PTPN4-201ENST00000263708 TROVE2P10155 538 aaKnown RBP eCLIP12.57□□□□□ -0.4
PTPN4-201ENST00000263708 KLHL40Q2TBA0 621 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 Q9H521 79 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 ELP1O95163 1332 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 KIAA1107Q9UPP5 1409 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 ZMAT2Q96NC0 199 aaKnown RBP12.57□□□□□ -0.4
PTPN4-201ENST00000263708 SETD1BQ9UPS6 1966 aaKnown RBP12.57□□□□□ -0.4
PTPN4-201ENST00000263708 GNGT2O14610 69 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 LRMPQ12912 555 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 TTC30AQ86WT1 665 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 DAPK1P53355 1430 aa12.57□□□□□ -0.4
PTPN4-201ENST00000263708 KCNA4P22459 653 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 SYCE1Q8N0S2 351 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 ZCRB1Q8TBF4 217 aaKnown RBP12.56□□□□□ -0.4
PTPN4-201ENST00000263708 GOLGA8CPA6NN73 597 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 ANLNQ9NQW6 1124 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 BRD3Q15059 726 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 FAF1Q9UNN5 650 aaPredicted RBP12.56□□□□□ -0.4
PTPN4-201ENST00000263708 VPS41P49754 854 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 ANKRD2Q9GZV1 360 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 TTC21BQ7Z4L5 1316 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 FAM83GA6ND36 823 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 RUFY4Q6ZNE9 571 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 PIK3AP1Q6ZUJ8 805 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 MYLK4Q86YV6 388 aaPredicted RBP12.56□□□□□ -0.4
PTPN4-201ENST00000263708 RHPN1Q8TCX5 695 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 CAPN12Q6ZSI9 719 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 CFTRP13569 1480 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 TXKP42681 527 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 P3H4Q92791 437 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 ZBED4O75132 1171 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 PEX26Q7Z412 305 aa12.56□□□□□ -0.4
PTPN4-201ENST00000263708 TYW5A2RUC4 315 aaKnown RBP12.55□□□□□ -0.4
PTPN4-201ENST00000263708 DNAJC8O75937 253 aaPredicted RBP12.55□□□□□ -0.4
PTPN4-201ENST00000263708 STX2P32856 288 aa12.55□□□□□ -0.4
PTPN4-201ENST00000263708 NPR1P16066 1061 aa12.55□□□□□ -0.4
PTPN4-201ENST00000263708 ARHGAP44Q17R89 818 aa12.55□□□□□ -0.4
PTPN4-201ENST00000263708 BRAPQ7Z569 592 aa12.55□□□□□ -0.4
PTPN4-201ENST00000263708 SECISBP2LQ93073 1101 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms