RNA–Protein interactions for RNA: ENSMUST00000077489.11

Scn1a-201, Transcript of Sodium channel protein type 1 subunit alpha, mousemouse

APPRIS P3 TSL 5 BASIC

Gene Scn1a, Length 8,116 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1a-201ENSMUST00000077489 Cfap54Q8C6S9 3106 aa3.38□□□□□ -1.87
Scn1a-201ENSMUST00000077489 Col12a1Q60847 3120 aa3.38□□□□□ -1.87
Scn1a-201ENSMUST00000077489 NipblQ6KCD5 2798 aaKnown RBP3.38□□□□□ -1.87
Scn1a-201ENSMUST00000077489 ApcQ61315 2845 aa3.37□□□□□ -1.87
Scn1a-201ENSMUST00000077489 Myo15aQ9QZZ4 3511 aa3.37□□□□□ -1.87
Scn1a-201ENSMUST00000077489 FryE9Q8I9 3020 aa3.37□□□□□ -1.87
Scn1a-201ENSMUST00000077489 Dchs2A0A0A6YW72 3346 aa3.36□□□□□ -1.87
Scn1a-201ENSMUST00000077489 Dmxl2Q8BPN8 3032 aa3.36□□□□□ -1.87
Scn1a-201ENSMUST00000077489 Tex15F8VPN2 2785 aa3.36□□□□□ -1.87
Scn1a-201ENSMUST00000077489 Prune2Q52KR3 3084 aa3.36□□□□□ -1.87
Scn1a-201ENSMUST00000077489 Gm2696A0A1W2P709 240 aa3.36□□□□□ -1.87
Scn1a-201ENSMUST00000077489 FcgbpE9Q0B5 2583 aa3.34□□□□□ -1.88
Scn1a-201ENSMUST00000077489 Lama1P19137 3084 aa3.33□□□□□ -1.88
Scn1a-201ENSMUST00000077489 RelnQ60841 3461 aa3.32□□□□□ -1.88
Scn1a-201ENSMUST00000077489 Itpr2Q9Z329 2701 aa3.32□□□□□ -1.88
Scn1a-201ENSMUST00000077489 NbeaQ9EPN1 2936 aa3.31□□□□□ -1.88
Scn1a-201ENSMUST00000077489 Tenm3Q9WTS6 2715 aa3.31□□□□□ -1.88
Scn1a-201ENSMUST00000077489 2210017I01RikA0A0A6YVV1 95 aa3.31□□□□□ -1.88
Scn1a-201ENSMUST00000077489 Celsr1O35161 3034 aa3.31□□□□□ -1.88
Scn1a-201ENSMUST00000077489 Wdfy4E9Q2M9 3149 aa3.3□□□□□ -1.88
Scn1a-201ENSMUST00000077489 KalrnA2CG49 2964 aa3.3□□□□□ -1.88
Scn1a-201ENSMUST00000077489 AtmQ62388 3066 aa3.29□□□□□ -1.88
Scn1a-201ENSMUST00000077489 Col7a1Q63870 2944 aa3.29□□□□□ -1.88
Scn1a-201ENSMUST00000077489 A030003K21RikA0A1Y7VIM3 128 aa3.28□□□□□ -1.88
Scn1a-201ENSMUST00000077489 FlnaQ8BTM8 2647 aaKnown RBP3.28□□□□□ -1.88
Scn1a-201ENSMUST00000077489 MgaA2AWL7 3003 aaKnown RBP3.27□□□□□ -1.89
Scn1a-201ENSMUST00000077489 Muc2Q80Z19 2680 aa3.27□□□□□ -1.89
Scn1a-201ENSMUST00000077489 Zzef1Q5SSH7 2924 aa3.26□□□□□ -1.89
Scn1a-201ENSMUST00000077489 Muc5acE9QAQ8 3455 aa3.26□□□□□ -1.89
Scn1a-201ENSMUST00000077489 LystP97412 3788 aa3.24□□□□□ -1.89
Scn1a-201ENSMUST00000077489 FrylF8VQ05 3007 aa3.24□□□□□ -1.89
Scn1a-201ENSMUST00000077489 Frem2Q6NVD0 3160 aa3.24□□□□□ -1.89
Scn1a-201ENSMUST00000077489 Bod1lE9Q6J5 3032 aa3.22□□□□□ -1.89
Scn1a-201ENSMUST00000077489 Igfn1Q3KNY0 2849 aa3.21□□□□□ -1.9
Scn1a-201ENSMUST00000077489 Helz2E9QAM5 2947 aaKnown RBP3.21□□□□□ -1.9
Scn1a-201ENSMUST00000077489 TgO08710 2766 aa3.2□□□□□ -1.9
Scn1a-201ENSMUST00000077489 FlnbQ80X90 2602 aaKnown RBP3.2□□□□□ -1.9
Scn1a-201ENSMUST00000077489 Vps13cQ8BX70 3748 aa3.19□□□□□ -1.9
Scn1a-201ENSMUST00000077489 4933428G20RikQ9D3X4 101 aa3.19□□□□□ -1.9
Scn1a-201ENSMUST00000077489 Trank1Q8BV79 2999 aa3.17□□□□□ -1.9
Scn1a-201ENSMUST00000077489 Gm19668J3QMD1 248 aa3.17□□□□□ -1.9
Scn1a-201ENSMUST00000077489 Dchs1E9PVD3 3291 aa3.15□□□□□ -1.9
Scn1a-201ENSMUST00000077489 FlncQ8VHX6 2726 aaKnown RBP3.14□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Tenm1Q9WTS4 2731 aa3.14□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Ash1lQ99MY8 2958 aa3.13□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Akap9Q70FJ1 3797 aa3.12□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Gm884A2A9H6 3643 aa3.12□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Csmd1Q923L3 3564 aa3.11□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Gm11939A2A592 99 aa3.1□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Gm9736A0A1W2P7N1 277 aa3.09□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Ranbp2Q9ERU9 3053 aaKnown RBP3.09□□□□□ -1.91
Scn1a-201ENSMUST00000077489 Nf1Q04690 2841 aa3.09□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Celsr3Q91ZI0 3301 aa3.08□□□□□ -1.92
Scn1a-201ENSMUST00000077489 LrbaQ9ESE1 2856 aa3.07□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Lama5Q61001 3718 aa3.06□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Gm6217A0A1Y7VJK9 128 aa3.05□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Muc4Q8JZM8 3443 aa3.05□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Pdzd2E9Q1M1 2796 aa3.04□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Krtap3-1A2A591 98 aa3.04□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Krtap13-1Q8K198 168 aa3.04□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Smg1Q8BKX6 3658 aaKnown RBP3.04□□□□□ -1.92
Scn1a-201ENSMUST00000077489 Krtap3-2Q9D638 99 aa3.02□□□□□ -1.93
Scn1a-201ENSMUST00000077489 Krtap3-3Q9D7P0 99 aa3.02□□□□□ -1.93
Scn1a-201ENSMUST00000077489 Ank2Q8C8R3 3898 aa3.02□□□□□ -1.93
Scn1a-201ENSMUST00000077489 Krtap19-5O08632 62 aa3.01□□□□□ -1.93
Scn1a-201ENSMUST00000077489 Cmya5Q70KF4 3739 aa3.01□□□□□ -1.93
Scn1a-201ENSMUST00000077489 Adgrg4B7ZCC9 3073 aa2.98□□□□□ -1.93
Scn1a-201ENSMUST00000077489 Megf8P60882 2789 aa2.95□□□□□ -1.94
Scn1a-201ENSMUST00000077489 Fbn2Q61555 2907 aa2.95□□□□□ -1.94
Scn1a-201ENSMUST00000077489 Huwe1Q7TMY8 4377 aaKnown RBP2.95□□□□□ -1.94
Scn1a-201ENSMUST00000077489 Gm9918Q8BUR5 174 aa2.93□□□□□ -1.94
Scn1a-201ENSMUST00000077489 Celsr2Q9R0M0 2920 aa2.9□□□□□ -1.95
Scn1a-201ENSMUST00000077489 Krtap28-10A0A1Y7VP58 119 aa2.9□□□□□ -1.95
Scn1a-201ENSMUST00000077489 Krtap1-5A2A590 122 aa2.9□□□□□ -1.95
Scn1a-201ENSMUST00000077489 A0A1Y7VJH8 109 aa2.87□□□□□ -1.95
Scn1a-201ENSMUST00000077489 Tenm2Q9WTS5 2764 aa2.87□□□□□ -1.95
Scn1a-201ENSMUST00000077489 Sprr2a3Q4KL71 83 aa2.87□□□□□ -1.95
Scn1a-201ENSMUST00000077489 Sprr2a1Q9CQK8 83 aa2.87□□□□□ -1.95
Scn1a-201ENSMUST00000077489 CubnQ9JLB4 3623 aa2.84□□□□□ -1.95
Scn1a-201ENSMUST00000077489 Svep1A2AVA0 3567 aa2.83□□□□□ -1.96
Scn1a-201ENSMUST00000077489 Gm10318A0A1W2P728 225 aa2.82□□□□□ -1.96
Scn1a-201ENSMUST00000077489 Krtap19-9aF8WH65 55 aa2.81□□□□□ -1.96
Scn1a-201ENSMUST00000077489 OtogO55225 2910 aa2.81□□□□□ -1.96
Scn1a-201ENSMUST00000077489 Tenm4Q3UHK6 2771 aa2.81□□□□□ -1.96
Scn1a-201ENSMUST00000077489 BsnO88737 3942 aa2.81□□□□□ -1.96
Scn1a-201ENSMUST00000077489 Hspg2Q05793 3707 aaKnown RBP2.81□□□□□ -1.96
Scn1a-201ENSMUST00000077489 Krtap28-13A0A087WQP5 138 aa2.8□□□□□ -1.96
Scn1a-201ENSMUST00000077489 Crct1Q6PAI5 102 aa2.8□□□□□ -1.96
Scn1a-201ENSMUST00000077489 A0A1Y7VJ07 166 aa2.79□□□□□ -1.96
Scn1a-201ENSMUST00000077489 Krtap7-1Q9D3I6 87 aa2.76□□□□□ -1.97
Scn1a-201ENSMUST00000077489 Krtap19-9bQ99NG9 58 aa2.75□□□□□ -1.97
Scn1a-201ENSMUST00000077489 Krtap1-4Q3V2D6 188 aa2.75□□□□□ -1.97
Scn1a-201ENSMUST00000077489 Ryr1E9PZQ0 5035 aa2.75□□□□□ -1.97
Scn1a-201ENSMUST00000077489 Gm7544A0A1Y7VJ58 118 aa2.74□□□□□ -1.97
Scn1a-201ENSMUST00000077489 VwfQ8CIZ8 2813 aa2.74□□□□□ -1.97
Scn1a-201ENSMUST00000077489 A030005K14RikA0A1Y7VNY1 122 aa2.74□□□□□ -1.97
Scn1a-201ENSMUST00000077489 TnxbO35452 4006 aa2.74□□□□□ -1.97
Scn1a-201ENSMUST00000077489 A030005L19RikA0A1Y7VIU2 113 aa2.73□□□□□ -1.97
Scn1a-201ENSMUST00000077489 Krtap8-1O08633 61 aa2.73□□□□□ -1.97
Scn1a-201ENSMUST00000077489 Xirp2Q4U4S6 3784 aa2.71□□□□□ -1.98
Retrieved 100 of 22,080 RNA–protein pairs in 97.5 ms