RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	BLI1	P35727	113 aa		2.6	□□□□□ -1.99
SNU114	YKL173W	PSD1	P39006	500 aa		2.6	□□□□□ -1.99
SNU114	YKL173W	CCT3	P39077	534 aa	Known RBP	2.6	□□□□□ -1.99
SNU114	YKL173W	KAP123	P40069	1113 aa	Known RBP	2.6	□□□□□ -1.99
SNU114	YKL173W	CCT7	P42943	550 aa	Known RBP	2.6	□□□□□ -1.99
SNU114	YKL173W	TAF4	P50105	388 aa		2.6	□□□□□ -1.99
SNU114	YKL173W	SPN1	Q06505	410 aa	Predicted RBP	2.6	□□□□□ -1.99
SNU114	YKL173W	AAD4	Q07747	329 aa		2.6	□□□□□ -1.99
SNU114	YKL173W	FUM1	P08417	488 aa	Known RBP	2.59	□□□□□ -1.99
SNU114	YKL173W	NAT1	P12945	854 aa	Known RBP	2.59	□□□□□ -1.99
SNU114	YKL173W	CWH43	P25618	953 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	ERG3	P32353	365 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	MSS1	P32559	526 aa	Predicted RBP	2.59	□□□□□ -1.99
SNU114	YKL173W	PET127	P32606	800 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	SDS22	P36047	338 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	NUP60	P39705	539 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	PRM2	P40534	656 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	LYS14	P40971	790 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	BIT61	P47041	543 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	NOP9	P47077	666 aa	Known RBP	2.59	□□□□□ -1.99
SNU114	YKL173W	IMA1	P53051	589 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	YNR061C	P53747	219 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	ORC4	P54791	529 aa		2.59	□□□□□ -1.99
SNU114	YKL173W	TY2B-LR1	P0C2J3	1770 aa		2.59	□□□□□ -2
SNU114	YKL173W	TY2B-F	P0CX63	1770 aa		2.59	□□□□□ -2
SNU114	YKL173W	TY2B-GR2	P0CX64	1770 aa		2.59	□□□□□ -2
SNU114	YKL173W	TY2B-C	P25384	1770 aa		2.59	□□□□□ -2
SNU114	YKL173W	TY2B-DR2	Q03494	1770 aa		2.59	□□□□□ -2
SNU114	YKL173W	TY1B-DR1	Q03855	1755 aa		2.59	□□□□□ -2
SNU114	YKL173W	TY2B-DR3	Q07791	1770 aa	Known RBP	2.59	□□□□□ -2
SNU114	YKL173W	TY2B-OR1	Q12113	1770 aa		2.59	□□□□□ -2
SNU114	YKL173W	TY2B-DR1	Q12472	1770 aa		2.59	□□□□□ -2
SNU114	YKL173W	TY2B-OR2	Q12501	1770 aa		2.59	□□□□□ -2
SNU114	YKL173W	ILS1	P09436	1072 aa	Known RBP	2.59	□□□□□ -2
SNU114	YKL173W	PYC1	P11154	1178 aa	Known RBP	2.59	□□□□□ -2
SNU114	YKL173W	JNM1	P36224	373 aa		2.59	□□□□□ -2
SNU114	YKL173W	APN2	P38207	520 aa		2.59	□□□□□ -2
SNU114	YKL173W	EHT1	P38295	451 aa		2.59	□□□□□ -2
SNU114	YKL173W	SSP120	P39931	234 aa	Known RBP	2.59	□□□□□ -2
SNU114	YKL173W	FTR1	P40088	404 aa		2.59	□□□□□ -2
SNU114	YKL173W	LTP1	P40347	161 aa		2.59	□□□□□ -2
SNU114	YKL173W	GND2	P53319	492 aa		2.59	□□□□□ -2
SNU114	YKL173W	RIA1	P53893	1110 aa		2.59	□□□□□ -2
SNU114	YKL173W	NSE5	Q03718	556 aa		2.59	□□□□□ -2
SNU114	YKL173W	TRI1	Q05024	226 aa		2.59	□□□□□ -2
SNU114	YKL173W	BUD3	P25558	1636 aa		2.59	□□□□□ -2
SNU114	YKL173W	SNF2	P22082	1703 aa		2.59	□□□□□ -2
SNU114	YKL173W	SUI3	P09064	285 aa	Known RBP	2.58	□□□□□ -2
SNU114	YKL173W	MRP7	P12687	371 aa		2.58	□□□□□ -2
SNU114	YKL173W	RNR1	P21524	888 aa	Known RBP	2.58	□□□□□ -2
SNU114	YKL173W	CMK1	P27466	446 aa	Known RBP	2.58	□□□□□ -2
SNU114	YKL173W	PSF2	P40359	213 aa		2.58	□□□□□ -2
SNU114	YKL173W	BST1	P43571	1029 aa		2.58	□□□□□ -2
SNU114	YKL173W	YMR206W	Q03695	313 aa		2.58	□□□□□ -2
SNU114	YKL173W	THI22	Q06490	572 aa		2.58	□□□□□ -2
SNU114	YKL173W	IRC3	Q06683	689 aa		2.58	□□□□□ -2
SNU114	YKL173W	SUL2	Q12325	893 aa		2.58	□□□□□ -2
SNU114	YKL173W	YKL033W-A	Q86ZR7	236 aa		2.58	□□□□□ -2
SNU114	YKL173W	SSN2	P38931	1420 aa		2.58	□□□□□ -2
SNU114	YKL173W	VPS15	P22219	1454 aa		2.58	□□□□□ -2
SNU114	YKL173W	PEX1	P24004	1043 aa		2.58	□□□□□ -2
SNU114	YKL173W	RPC53	P25441	422 aa		2.58	□□□□□ -2
SNU114	YKL173W	PRP45	P28004	379 aa	Predicted RBP	2.58	□□□□□ -2
SNU114	YKL173W	SWI3	P32591	825 aa		2.58	□□□□□ -2
SNU114	YKL173W	NPL6	P32832	435 aa		2.58	□□□□□ -2
SNU114	YKL173W	YPT53	P36019	220 aa		2.58	□□□□□ -2
SNU114	YKL173W	YKR075C	P36155	307 aa		2.58	□□□□□ -2
SNU114	YKL173W	GSM1	P42950	618 aa		2.58	□□□□□ -2
SNU114	YKL173W	PAN2	P53010	1115 aa	Predicted RBP	2.58	□□□□□ -2
SNU114	YKL173W	MRPL19	P53875	158 aa		2.58	□□□□□ -2
SNU114	YKL173W	YPL071C	Q02864	156 aa		2.58	□□□□□ -2
SNU114	YKL173W	GAD1	Q04792	585 aa		2.58	□□□□□ -2
SNU114	YKL173W	MRH1	Q12117	320 aa	Predicted RBP	2.58	□□□□□ -2
SNU114	YKL173W	RPB2	P08518	1224 aa	Known RBP	2.58	□□□□□ -2
SNU114	YKL173W	HMG2	P12684	1045 aa		2.58	□□□□□ -2
SNU114	YKL173W	KAR3	P17119	729 aa		2.58	□□□□□ -2
SNU114	YKL173W	SGF29	P25554	259 aa		2.58	□□□□□ -2
SNU114	YKL173W	ARP2	P32381	391 aa	Known RBP	2.58	□□□□□ -2
SNU114	YKL173W	VMA8	P32610	256 aa	Known RBP	2.58	□□□□□ -2
SNU114	YKL173W	YHR033W	P38690	423 aa		2.58	□□□□□ -2
SNU114	YKL173W	NPR3	P38742	1146 aa		2.58	□□□□□ -2
SNU114	YKL173W	GPD2	P41911	440 aa	Known RBP	2.58	□□□□□ -2
SNU114	YKL173W	TAM41	P53230	385 aa		2.58	□□□□□ -2
SNU114	YKL173W	REC102	Q02721	264 aa		2.58	□□□□□ -2
SNU114	YKL173W	TIM50	Q02776	476 aa		2.58	□□□□□ -2
SNU114	YKL173W	NGL3	Q03210	505 aa		2.58	□□□□□ -2
SNU114	YKL173W	YDR131C	Q03899	556 aa		2.58	□□□□□ -2
SNU114	YKL173W	AIM6	Q07716	390 aa		2.58	□□□□□ -2
SNU114	YKL173W	MLH3	Q12083	715 aa		2.58	□□□□□ -2
SNU114	YKL173W	RRG1	Q12167	365 aa	Predicted RBP	2.58	□□□□□ -2
SNU114	YKL173W	HSH49	Q99181	213 aa	Predicted RBP	2.58	□□□□□ -2
SNU114	YKL173W	STB5	P38699	743 aa		2.57	□□□□□ -2
SNU114	YKL173W	APE4	P38821	490 aa		2.57	□□□□□ -2
SNU114	YKL173W	YSA1	Q01976	231 aa		2.57	□□□□□ -2
SNU114	YKL173W	MEH1	Q02205	184 aa		2.57	□□□□□ -2
SNU114	YKL173W	TLG1	Q03322	224 aa		2.57	□□□□□ -2
SNU114	YKL173W	YLR287C	Q05881	355 aa		2.57	□□□□□ -2
SNU114	YKL173W	YLR345W	Q06137	509 aa		2.57	□□□□□ -2
SNU114	YKL173W	TAH18	Q12181	623 aa		2.57	□□□□□ -2
SNU114	YKL173W	ULS1	Q08562	1619 aa		2.57	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 28.3 ms