RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	APC1	P53886	1748 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	YRF1-3	P0CX14	1859 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	YRF1-7	P0CX15	1859 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	YRF1-6	P53819	1859 aa		5.39	□□□□□ -1.55
CAF16	YFL028C	UBC1	P21734	215 aa	Known RBP	5.38	□□□□□ -1.55
CAF16	YFL028C	YCR015C	P25616	317 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	FRD1	P32614	470 aa	Known RBP	5.38	□□□□□ -1.55
CAF16	YFL028C	SET3	P36124	751 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	MRPL36	P36531	177 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	REV7	P38927	245 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	CAB2	P40506	365 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	POL31	P46957	487 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	BUL1	P48524	976 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	UBC11	P52492	156 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	SLM3	Q12093	417 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	RSF2	P46974	1380 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	AUS1	Q08409	1394 aa		5.38	□□□□□ -1.55
CAF16	YFL028C	CTT1	P06115	562 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	SNF1	P06782	633 aa	Known RBP	5.37	□□□□□ -1.55
CAF16	YFL028C	PRP28	P23394	588 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	DCG1	P32460	244 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	RPT3	P33298	428 aa	Known RBP	5.37	□□□□□ -1.55
CAF16	YFL028C	YEL025C	P39991	1188 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	TMA108	P40462	946 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	YJL163C	P46996	555 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	MPS3	P47069	682 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	SAP4	P53036	818 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	TRS31	Q03337	283 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	VPS64	Q03944	604 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	VID22	Q05934	901 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	CSR1	Q06705	408 aa	Known RBP	5.37	□□□□□ -1.55
CAF16	YFL028C	FRE5	Q08908	694 aa		5.37	□□□□□ -1.55
CAF16	YFL028C	GUK1	P15454	187 aa	Known RBP	5.36	□□□□□ -1.55
CAF16	YFL028C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.36	□□□□□ -1.55	not detected
CAF16	YFL028C	VPS33	P20795	691 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	RNQ1	P25367	405 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	RAD16	P31244	790 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	AXL2	P38928	823 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	UME6	P39001	836 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.36	□□□□□ -1.55	not detected
CAF16	YFL028C	NOC2	P39744	710 aa	Known RBP	5.36	□□□□□ -1.55
CAF16	YFL028C	RRT6	P53117	311 aa	Predicted RBP	5.36	□□□□□ -1.55
CAF16	YFL028C	YGR054W	P53235	642 aa	Known RBP	5.36	□□□□□ -1.55
CAF16	YFL028C	TAP42	Q04372	366 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	TRM8	Q12009	286 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	ICL2	Q12031	575 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	CLF1	Q12309	687 aa	Predicted RBP	5.36	□□□□□ -1.55
CAF16	YFL028C	YKL033W-A	Q86ZR7	236 aa		5.36	□□□□□ -1.55
CAF16	YFL028C	BET2	P20133	325 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	ERG4	P25340	473 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	EFT1	P32324	842 aa	Known RBP	5.35	□□□□□ -1.55
CAF16	YFL028C	NTH1	P32356	751 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	ARP2	P32381	391 aa	Known RBP	5.35	□□□□□ -1.55
CAF16	YFL028C	MSS1	P32559	526 aa	Predicted RBP	5.35	□□□□□ -1.55
CAF16	YFL028C	PHO11	P35842	467 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	PHO12	P38693	467 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	YJL193W	P39542	402 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	CTF18	P49956	741 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	MDM1	Q01846	1127 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	HOF1	Q05080	669 aa		5.35	□□□□□ -1.55
CAF16	YFL028C	SEC3	P33332	1336 aa	Known RBP	5.34	□□□□□ -1.55
CAF16	YFL028C	PMA1	P05030	918 aa	Known RBP	5.34	□□□□□ -1.55
CAF16	YFL028C	NPR3	P38742	1146 aa		5.34	□□□□□ -1.55
CAF16	YFL028C	LRO1	P40345	661 aa		5.34	□□□□□ -1.55
CAF16	YFL028C	PHO23	P50947	330 aa		5.34	□□□□□ -1.55
CAF16	YFL028C	ATG21	Q02887	496 aa		5.34	□□□□□ -1.55
CAF16	YFL028C	ADY4	Q05955	493 aa		5.34	□□□□□ -1.55
CAF16	YFL028C	ROM2	P51862	1356 aa	Known RBP	5.33	□□□□□ -1.56
CAF16	YFL028C	INH1	P01097	85 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	HRR25	P29295	494 aa	Known RBP	5.33	□□□□□ -1.56
CAF16	YFL028C	PRE2	P30656	287 aa	Known RBP	5.33	□□□□□ -1.56
CAF16	YFL028C	DSS4	P32601	143 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	MPE1	P35728	441 aa	Known RBP	5.33	□□□□□ -1.56
CAF16	YFL028C	TEF4	P36008	412 aa	Known RBP	5.33	□□□□□ -1.56
CAF16	YFL028C	MUD2	P36084	527 aa	Known RBP	5.33	□□□□□ -1.56
CAF16	YFL028C	FSH1	P38777	243 aa	Known RBP	5.33	□□□□□ -1.56
CAF16	YFL028C	FMP52	P40008	231 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	KHA1	P40309	873 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	IMA1	P53051	589 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	CLU1	Q03690	1277 aa	Known RBP	5.33	□□□□□ -1.56
CAF16	YFL028C	TFC6	Q06339	672 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	ARR3	Q06598	404 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	AIM39	Q08223	395 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	MLH3	Q12083	715 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	USV1	Q12132	391 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	COX17	Q12287	69 aa		5.33	□□□□□ -1.56
CAF16	YFL028C	TPK1	P06244	397 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	SIR3	P06701	978 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	ALG7	P07286	448 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	HSC82	P15108	705 aa	Known RBP	5.32	□□□□□ -1.56
CAF16	YFL028C	THR1	P17423	357 aa	Known RBP	5.32	□□□□□ -1.56
CAF16	YFL028C	THI80	P35202	319 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	DHR2	P36009	735 aa	Predicted RBP	5.32	□□□□□ -1.56
CAF16	YFL028C	ELF1	P36053	145 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	CTP1	P38152	299 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	YEL068C	P39977	110 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	YER010C	P40011	234 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	NDE1	P40215	560 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	DPH1	P40487	425 aa	Known RBP	5.32	□□□□□ -1.56
CAF16	YFL028C	DOT5	P40553	215 aa		5.32	□□□□□ -1.56

Retrieved 100 of 5,963 RNA–protein pairs in 19.4 ms