RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	ENT5	Q03769	411 aa	Known RBP	10.99	□□□□□ -0.65
VPS60	YDR486C	MSH6	Q03834	1242 aa		10.99	□□□□□ -0.65
VPS60	YDR486C	RTN1	Q04947	295 aa	Known RBP	10.99	□□□□□ -0.65
VPS60	YDR486C	COX5A	P00424	153 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	TEF1	P02994	458 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	ILS1	P09436	1072 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	MIS1	P09440	975 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	HSF1	P10961	833 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	MRS6	P32864	603 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	SMF2	P38778	549 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	VAC8	P39968	578 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	DLD2	P46681	530 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	DOS2	P54858	310 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	RNT1	Q02555	471 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	SLU7	Q02775	382 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	LEE1	Q02799	301 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	ADE13	Q05911	482 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	YCS4	Q06156	1176 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	YLR012C	Q07927	99 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	CUE5	Q08412	411 aa	Known RBP	10.98	□□□□□ -0.65
VPS60	YDR486C	SGO1	Q08490	590 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	OCA6	Q12454	224 aa		10.98	□□□□□ -0.65
VPS60	YDR486C	PAT1	P25644	796 aa	Known RBP	10.97	□□□□□ -0.65
VPS60	YDR486C	OAF3	P36023	863 aa		10.97	□□□□□ -0.65
VPS60	YDR486C	SRP68	P38687	599 aa	Known RBP	10.97	□□□□□ -0.65
VPS60	YDR486C	ROK1	P45818	564 aa	Predicted RBP	10.97	□□□□□ -0.65
VPS60	YDR486C	ASN2	P49090	572 aa	Known RBP	10.97	□□□□□ -0.65
VPS60	YDR486C	GND2	P53319	492 aa		10.97	□□□□□ -0.65
VPS60	YDR486C	TOF2	Q02208	771 aa		10.97	□□□□□ -0.65
VPS60	YDR486C	HOS1	Q12214	470 aa		10.97	□□□□□ -0.65
VPS60	YDR486C	YPR117W	Q06116	2489 aa		10.97	□□□□□ -0.65
VPS60	YDR486C	ILV2	P07342	687 aa	Known RBP	10.96	□□□□□ -0.65
VPS60	YDR486C	MRPL25	P23369	157 aa		10.96	□□□□□ -0.65
VPS60	YDR486C	KAR9	P32526	644 aa		10.96	□□□□□ -0.65
VPS60	YDR486C	ADD66	P36040	267 aa		10.96	□□□□□ -0.65
VPS60	YDR486C	CIN4	P39110	191 aa		10.96	□□□□□ -0.65
VPS60	YDR486C	YFL012W	P43580	148 aa		10.96	□□□□□ -0.65
VPS60	YDR486C	PML39	Q03760	334 aa		10.96	□□□□□ -0.65
VPS60	YDR486C	URA10	P30402	227 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	ELO3	P40319	345 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	UBP7	P40453	1071 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	DPH1	P40487	425 aa	Known RBP	10.95	□□□□□ -0.66
VPS60	YDR486C	RRN7	P40992	514 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	TIM13	P53299	105 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	YNR063W	P53749	607 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	KTR5	P53966	522 aa	Predicted RBP	10.95	□□□□□ -0.66
VPS60	YDR486C	YPL014W	Q02606	381 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	SEG1	Q04279	960 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	OMS1	Q06668	471 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	PGC1	Q08959	321 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	LDB17	Q12342	491 aa		10.95	□□□□□ -0.66
VPS60	YDR486C	SIR1	P21691	654 aa		10.94	□□□□□ -0.66
VPS60	YDR486C	RAM1	P22007	431 aa		10.94	□□□□□ -0.66
VPS60	YDR486C	SRP101	P32916	621 aa		10.94	□□□□□ -0.66
VPS60	YDR486C	MET14	Q02196	202 aa		10.94	□□□□□ -0.66
VPS60	YDR486C	RLI1	Q03195	608 aa	Known RBP	10.94	□□□□□ -0.66
VPS60	YDR486C	YMR206W	Q03695	313 aa		10.94	□□□□□ -0.66
VPS60	YDR486C	TMN2	Q04562	672 aa		10.94	□□□□□ -0.66
VPS60	YDR486C	YDR344C	Q05510	147 aa		10.94	□□□□□ -0.66
VPS60	YDR486C	NDD1	Q08887	554 aa		10.94	□□□□□ -0.66
VPS60	YDR486C	YCL068C	P25593	260 aa		10.93	□□□□□ -0.66
VPS60	YDR486C	NDI1	P32340	513 aa		10.93	□□□□□ -0.66
VPS60	YDR486C	HEM12	P32347	362 aa	Predicted RBP	10.93	□□□□□ -0.66
VPS60	YDR486C	SMI1	P32566	505 aa		10.93	□□□□□ -0.66
VPS60	YDR486C	SPC97	P38863	823 aa		10.93	□□□□□ -0.66
VPS60	YDR486C	AMA1	P50082	593 aa		10.93	□□□□□ -0.66
VPS60	YDR486C	TUB4	P53378	473 aa		10.93	□□□□□ -0.66
VPS60	YDR486C	SIW14	P53965	281 aa		10.93	□□□□□ -0.66
VPS60	YDR486C	PEX15	Q08215	383 aa		10.93	□□□□□ -0.66
VPS60	YDR486C	REV1	P12689	985 aa		10.92	□□□□□ -0.66
VPS60	YDR486C	ARF2	P19146	181 aa	Known RBP	10.92	□□□□□ -0.66
VPS60	YDR486C	AAT2	P23542	418 aa	Known RBP	10.92	□□□□□ -0.66
VPS60	YDR486C	COY1	P34237	679 aa		10.92	□□□□□ -0.66
VPS60	YDR486C	MRPL40	P36534	297 aa		10.92	□□□□□ -0.66
VPS60	YDR486C	POL12	P38121	705 aa	Predicted RBP	10.92	□□□□□ -0.66
VPS60	YDR486C	APM3	P38153	483 aa		10.92	□□□□□ -0.66
VPS60	YDR486C	TEP1	P53916	434 aa		10.92	□□□□□ -0.66
VPS60	YDR486C	SLT2	Q00772	484 aa		10.92	□□□□□ -0.66
VPS60	YDR486C	UTP13	Q05946	817 aa	Known RBP	10.92	□□□□□ -0.66
VPS60	YDR486C	SLD7	Q08457	257 aa		10.92	□□□□□ -0.66
VPS60	YDR486C	GPA2	P10823	449 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	10.91	□□□□□ -0.66	not detected
VPS60	YDR486C	MSH1	P25846	959 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	PEX5	P35056	612 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	TGL4	P36165	910 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	ETR1	P38071	380 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	YHL041W	P38730	149 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	HEM14	P40012	539 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	IST3	P40565	148 aa	Predicted RBP	10.91	□□□□□ -0.66
VPS60	YDR486C	PXA1	P41909	870 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	STR3	P53101	465 aa	Known RBP	10.91	□□□□□ -0.66
VPS60	YDR486C	CDC14	Q00684	551 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	BUD22	Q04347	519 aa	Known RBP	10.91	□□□□□ -0.66
VPS60	YDR486C	YET3	Q07451	203 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	PDH1	Q12428	516 aa	Known RBP	10.91	□□□□□ -0.66
VPS60	YDR486C	YEL077C	Q3E7X8	1277 aa		10.91	□□□□□ -0.66
VPS60	YDR486C	ENO1	P00924	437 aa	Known RBP	10.9	□□□□□ -0.66
VPS60	YDR486C	HSP60	P19882	572 aa	Known RBP	10.9	□□□□□ -0.66
VPS60	YDR486C	YCR051W	P25631	222 aa		10.9	□□□□□ -0.66
VPS60	YDR486C	EXO1	P39875	702 aa		10.9	□□□□□ -0.66

Retrieved 100 of 5,963 RNA–protein pairs in 53.3 ms