RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 IL25Q9H293 177 aa6.32□□□□□ -1.4
SHMT1-211ENST00000618902 ARMT1Q9H993 441 aa6.32□□□□□ -1.4
SHMT1-211ENST00000618902 ZNF408Q9H9D4 720 aa6.32□□□□□ -1.4
SHMT1-211ENST00000618902 A0A0D9SFI3 127 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 RNF113AO15541 343 aaKnown RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 GNRH1P01148 92 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 SDSP20132 328 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 GTF2A2P52657 109 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 MAP3K9P80192 1104 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 PPATQ06203 517 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 NMIQ13287 307 aaPredicted RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 RRP1BQ14684 758 aaKnown RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 IFFO2Q5TF58 517 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 SPRYD7Q5W111 196 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 SAMD1Q6SPF0 538 aaPredicted RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 CCDC129Q6ZRS4 1044 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 ZNF589Q86UQ0 364 aaPredicted RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 ERO1BQ86YB8 467 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 RASAL3Q86YV0 1011 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 MAPKAPK5Q8IW41 473 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 TGFBRAP1Q8WUH2 860 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 EVI5LQ96CN4 794 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 CSRNP1Q96S65 589 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 STRBPQ96SI9 672 aaKnown RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 ZNF341Q9BYN7 854 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 EPB41L4AQ9HCS5 686 aaPredicted RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 HERC5Q9UII4 1024 aaKnown RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 ZNF112Q9UJU3 913 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 SIPA1L1O43166 1804 aa6.31□□□□□ -1.4
SHMT1-211ENST00000618902 MKI67P46013 3256 aaKnown RBP6.31□□□□□ -1.4
SHMT1-211ENST00000618902 FLT1P17948 1338 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 CYP2D7A0A087X1C5 515 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 MAGEB6P1A0A0J9YX57 407 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 FAM196BA6NMK8 535 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 UBE2Q2LH0YL09 131 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 CXCL11O14625 94 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 CTNND1O60716 968 aaKnown RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 USP2O75604 605 aaPredicted RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 CYP2D6P10635 497 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 JAG1P78504 1218 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 KIF23Q02241 960 aaPredicted RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 PICALMQ13492 652 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 PRKG1Q13976 671 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 SHROOM1Q2M3G4 852 aaPredicted RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 SLC4A8Q2Y0W8 1093 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 NOL9Q5SY16 702 aaKnown RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 VPS53Q5VIR6 699 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 ZSCAN25Q6NSZ9 544 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 MIGA2Q7L4E1 593 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 METTL16Q86W50 562 aaKnown RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 SDR42E1Q8WUS8 393 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 APPBP2Q92624 585 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 CLMNQ96JQ2 1002 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 ZIC5Q96T25 663 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 FSD1Q9BTV5 496 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 OSBPL5Q9H0X9 879 aaPredicted RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 DNAJC18Q9H819 358 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 PI4KBQ9UBF8 816 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 SAP30BPQ9UHR5 308 aaKnown RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 ANGEL1Q9UNK9 670 aaKnown RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 SLC45A1Q9Y2W3 748 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 TACC3Q9Y6A5 838 aa6.3□□□□□ -1.4
SHMT1-211ENST00000618902 DDX60LQ5H9U9 1706 aaKnown RBP6.3□□□□□ -1.4
SHMT1-211ENST00000618902 FOCADQ5VW36 1801 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 LAMB1P07942 1786 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 BAZ2AQ9UIF9 1905 aaKnown RBP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 SPDYE5A6NIY4 337 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 GSG1L2A8MUP6 293 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 PHF20L1A8MW92 1017 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 TRIM6-TRIM34B2RNG4 842 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 FOXN1O15353 648 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 GPAA1O43292 621 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 HSPA8P11142 646 aaKnown RBP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 CETPP11597 493 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 DEKP35659 375 aaKnown RBP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 GJA5P36382 358 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 NT5C2P49902 561 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 PPIL2Q13356 520 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 SNAPC2Q13487 334 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 BECN1Q14457 450 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 FOXP4Q8IVH2 680 aaPredicted RBP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 RILPL2Q969X0 211 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 UPF2Q9HAU5 1272 aaKnown RBP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 DCP1AQ9NPI6 582 aaPredicted RBP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.29□□□□□ -1.4
SHMT1-211ENST00000618902 PALD1Q9ULE6 856 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 AK9Q5TCS8 1911 aa6.29□□□□□ -1.4
SHMT1-211ENST00000618902 OTOFQ9HC10 1997 aa6.28□□□□□ -1.4
SHMT1-211ENST00000618902 ZFYP08048 801 aaPredicted RBP6.28□□□□□ -1.4
SHMT1-211ENST00000618902 CHMLP26374 656 aa6.28□□□□□ -1.4
SHMT1-211ENST00000618902 INPP5BP32019 993 aa6.28□□□□□ -1.4
SHMT1-211ENST00000618902 PLCD1P51178 756 aa6.28□□□□□ -1.4
SHMT1-211ENST00000618902 PRMT2P55345 433 aa6.28□□□□□ -1.4
SHMT1-211ENST00000618902 FASTKD5Q7L8L6 764 aaKnown RBP6.28□□□□□ -1.4
SHMT1-211ENST00000618902 CCDC84Q86UT8 332 aaPredicted RBP6.28□□□□□ -1.4
SHMT1-211ENST00000618902 SLC44A5Q8NCS7 719 aa6.28□□□□□ -1.4
SHMT1-211ENST00000618902 NKX2-3Q8TAU0 364 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms