RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SH3TC2Q8TF17 1288 aa16.69■□□□□ 0.26
TRIM28-211ENST00000597968 AS3MTQ9HBK9 375 aa16.69■□□□□ 0.26
TRIM28-211ENST00000597968 DOCK1Q14185 1865 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 SURF6O75683 361 aaKnown RBP16.68■□□□□ 0.26
TRIM28-211ENST00000597968 CYP2C8P10632 490 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 CTGFP29279 349 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 CAP2P40123 477 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 GCLCP48506 637 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-211ENST00000597968 HNRNPUQ00839 825 aaKnown RBP eCLIP16.68■□□□□ 0.26
TRIM28-211ENST00000597968 IRF5Q13568 498 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 PI16Q6UXB8 463 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 GADL1Q6ZQY3 521 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 TBC1D9Q6ZT07 1266 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 FOXP4Q8IVH2 680 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-211ENST00000597968 TEX11Q8IYF3 940 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 ZNF280CQ8ND82 737 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 PXYLP1Q8TE99 480 aa16.68■□□□□ 0.26
TRIM28-211ENST00000597968 KIAA0100Q14667 2235 aaKnown RBP16.68■□□□□ 0.26
TRIM28-211ENST00000597968 TRIM75PA6NK02 468 aa16.67■□□□□ 0.26
TRIM28-211ENST00000597968 GJB1P08034 283 aa16.67■□□□□ 0.26
TRIM28-211ENST00000597968 MS4A1P11836 297 aa16.67■□□□□ 0.26
TRIM28-211ENST00000597968 FAM110CQ1W6H9 321 aa16.67■□□□□ 0.26
TRIM28-211ENST00000597968 SH3D19Q5HYK7 790 aa16.67■□□□□ 0.26
TRIM28-211ENST00000597968 USP17L5A8MUK1 530 aa16.66■□□□□ 0.26
TRIM28-211ENST00000597968 ASNSP08243 561 aa16.66■□□□□ 0.26
TRIM28-211ENST00000597968 GJA8P48165 433 aa16.66■□□□□ 0.26
TRIM28-211ENST00000597968 HSP90AB4PQ58FF6 505 aa16.66■□□□□ 0.26
TRIM28-211ENST00000597968 ERC1Q8IUD2 1116 aa16.66■□□□□ 0.26
TRIM28-211ENST00000597968 WDR18Q9BV38 432 aa16.66■□□□□ 0.26
TRIM28-211ENST00000597968 MAST2Q6P0Q8 1798 aa16.65■□□□□ 0.26
TRIM28-211ENST00000597968 CYP2E1P05181 493 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-211ENST00000597968 PRKCZQ05513 592 aa16.65■□□□□ 0.26
TRIM28-211ENST00000597968 ITPRIPQ8IWB1 547 aa16.65■□□□□ 0.26
TRIM28-211ENST00000597968 DBNDD2Q9BQY9 259 aa16.65■□□□□ 0.26
TRIM28-211ENST00000597968 AATFQ9NY61 560 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRIM28-211ENST00000597968 ZBED9Q6R2W3 1325 aa16.65■□□□□ 0.26
TRIM28-211ENST00000597968 TNPO2O14787 897 aaKnown RBP16.64■□□□□ 0.25
TRIM28-211ENST00000597968 SPP2Q13103 211 aa16.64■□□□□ 0.25
TRIM28-211ENST00000597968 SH3RF3Q8TEJ3 882 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-211ENST00000597968 COA7Q96BR5 231 aa16.64■□□□□ 0.25
TRIM28-211ENST00000597968 PHIPQ8WWQ0 1821 aa16.63■□□□□ 0.25
TRIM28-211ENST00000597968 PTPRFP10586 1907 aa16.63■□□□□ 0.25
TRIM28-211ENST00000597968 C19orf81C9J6K1 198 aa16.63■□□□□ 0.25
TRIM28-211ENST00000597968 HLA-DOAP06340 250 aa16.63■□□□□ 0.25
TRIM28-211ENST00000597968 HABP4Q5JVS0 413 aaKnown RBP16.63■□□□□ 0.25
TRIM28-211ENST00000597968 BIN2Q9UBW5 565 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-211ENST00000597968 DBNLQ9UJU6 430 aaKnown RBP16.63■□□□□ 0.25
TRIM28-211ENST00000597968 FLT1P17948 1338 aa16.63■□□□□ 0.25
TRIM28-211ENST00000597968 ADCY3O60266 1144 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 CCL5P13501 91 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 HOXA7P31268 230 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-211ENST00000597968 FLT3LGP49771 235 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 BACE1P56817 501 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 MTFR1Q15390 333 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 CEP85Q6P2H3 762 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 GTF3C2Q8WUA4 911 aaPredicted RBP16.62■□□□□ 0.25
TRIM28-211ENST00000597968 TGFBRAP1Q8WUH2 860 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 HTATIP2Q9BUP3 242 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 TRIM34Q9BYJ4 488 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 RNF208Q9H0X6 261 aa16.62■□□□□ 0.25
TRIM28-211ENST00000597968 CHMP4BQ9H444 224 aaKnown RBP16.62■□□□□ 0.25
TRIM28-211ENST00000597968 ZSWIM8A7E2V4 1837 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 ZAP70P43403 619 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 MAP3K12Q12852 859 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 TREML2Q5T2D2 321 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 UBE2Q1Q7Z7E8 422 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 CRACR2BQ8N4Y2 399 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-211ENST00000597968 ANKRD13CQ8N6S4 541 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 EAF2Q96CJ1 260 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-211ENST00000597968 SHISA4Q96DD7 197 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 SNRKQ9NRH2 765 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 TAOK2Q9UL54 1235 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 LOC285556D6RIA3 1793 aa16.61■□□□□ 0.25
TRIM28-211ENST00000597968 FAM196BA6NMK8 535 aa16.6■□□□□ 0.25
TRIM28-211ENST00000597968 SLURP2P0DP57 97 aa16.6■□□□□ 0.25
TRIM28-211ENST00000597968 RLBP1P12271 317 aa16.6■□□□□ 0.25
TRIM28-211ENST00000597968 HMGCS2P54868 508 aa16.6■□□□□ 0.25
TRIM28-211ENST00000597968 TTF1Q15361 905 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-211ENST00000597968 ASCC2Q9H1I8 757 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-211ENST00000597968 EHD4Q9H223 541 aa16.6■□□□□ 0.25
TRIM28-211ENST00000597968 TMOD4Q9NZQ9 345 aa16.6■□□□□ 0.25
TRIM28-211ENST00000597968 MORF4L1Q9UBU8 362 aa16.6■□□□□ 0.25
TRIM28-211ENST00000597968 GABRQQ9UN88 632 aa16.6■□□□□ 0.25
TRIM28-211ENST00000597968 MGAMO43451 1857 aa16.59■□□□□ 0.25
TRIM28-211ENST00000597968 USP17L10C9JJH3 530 aa16.59■□□□□ 0.25
TRIM28-211ENST00000597968 SGPL1O95470 568 aa16.59■□□□□ 0.25
TRIM28-211ENST00000597968 MYCP01106 439 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-211ENST00000597968 CYP7A1P22680 504 aa16.59■□□□□ 0.25
TRIM28-211ENST00000597968 ADGRA1Q86SQ6 560 aa16.59■□□□□ 0.25
TRIM28-211ENST00000597968 MAPKAPK5Q8IW41 473 aa16.59■□□□□ 0.25
TRIM28-211ENST00000597968 RPAP2Q8IXW5 612 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-211ENST00000597968 U2AF1L4Q8WU68 220 aaKnown RBP16.59■□□□□ 0.25
TRIM28-211ENST00000597968 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.59■□□□□ 0.25
TRIM28-211ENST00000597968 C1orf115Q9H7X2 142 aa16.59■□□□□ 0.25
TRIM28-211ENST00000597968 HMMRO75330 724 aa16.58■□□□□ 0.24
TRIM28-211ENST00000597968 IDH1O75874 414 aaKnown RBP16.58■□□□□ 0.24
TRIM28-211ENST00000597968 RRP1BQ14684 758 aaKnown RBP16.58■□□□□ 0.24
TRIM28-211ENST00000597968 TTC6Q86TZ1 520 aa16.58■□□□□ 0.24
TRIM28-211ENST00000597968 CCDC84Q86UT8 332 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-211ENST00000597968 CCDC8Q9H0W5 538 aaPredicted RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 165.9 ms