RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 MYCP01106 439 aaPredicted RBP21.01■□□□□ 0.95
CLN3-216ENST00000565316 CYP2E1P05181 493 aaPredicted RBP21.01■□□□□ 0.95
CLN3-216ENST00000565316 GRK4P32298 578 aa21.01■□□□□ 0.95
CLN3-216ENST00000565316 MTFR1Q15390 333 aa21.01■□□□□ 0.95
CLN3-216ENST00000565316 NAA16Q6N069 864 aaPredicted RBP21.01■□□□□ 0.95
CLN3-216ENST00000565316 CCDC84Q86UT8 332 aaPredicted RBP21.01■□□□□ 0.95
CLN3-216ENST00000565316 TBC1D2Q9BYX2 928 aa21.01■□□□□ 0.95
CLN3-216ENST00000565316 HERC5Q9UII4 1024 aaKnown RBP21.01■□□□□ 0.95
CLN3-216ENST00000565316 AGTPBP1Q9UPW5 1226 aa21.01■□□□□ 0.95
CLN3-216ENST00000565316 BAG3O95817 575 aa21■□□□□ 0.95
CLN3-216ENST00000565316 PLCG2P16885 1265 aa21■□□□□ 0.95
CLN3-216ENST00000565316 CAP2P40123 477 aa21■□□□□ 0.95
CLN3-216ENST00000565316 PRKCZQ05513 592 aa21■□□□□ 0.95
CLN3-216ENST00000565316 RRP1BQ14684 758 aaKnown RBP21■□□□□ 0.95
CLN3-216ENST00000565316 ITPRIPQ8IWB1 547 aa21■□□□□ 0.95
CLN3-216ENST00000565316 PROCA1Q8NCQ7 364 aaPredicted RBP21■□□□□ 0.95
CLN3-216ENST00000565316 NOL10Q9BSC4 688 aaKnown RBP21■□□□□ 0.95
CLN3-216ENST00000565316 ADGRA1Q86SQ6 560 aa20.99■□□□□ 0.95
CLN3-216ENST00000565316 METTL16Q86W50 562 aaKnown RBP20.99■□□□□ 0.95
CLN3-216ENST00000565316 ZNF280CQ8ND82 737 aa20.99■□□□□ 0.95
CLN3-216ENST00000565316 DHX36Q9H2U1 1008 aaKnown RBP20.99■□□□□ 0.95
CLN3-216ENST00000565316 AATFQ9NY61 560 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLN3-216ENST00000565316 PI4KBQ9UBF8 816 aa20.99■□□□□ 0.95
CLN3-216ENST00000565316 DBNLQ9UJU6 430 aaKnown RBP20.99■□□□□ 0.95
CLN3-216ENST00000565316 SPP2Q13103 211 aa20.98■□□□□ 0.95
CLN3-216ENST00000565316 TREML2Q5T2D2 321 aa20.98■□□□□ 0.95
CLN3-216ENST00000565316 SHISA4Q96DD7 197 aa20.98■□□□□ 0.95
CLN3-216ENST00000565316 PCDH10Q9P2E7 1040 aa20.98■□□□□ 0.95
CLN3-216ENST00000565316 GABRQQ9UN88 632 aa20.98■□□□□ 0.95
CLN3-216ENST00000565316 CEP290O15078 2479 aa20.97■□□□□ 0.95
CLN3-216ENST00000565316 USP17L5A8MUK1 530 aa20.97■□□□□ 0.95
CLN3-216ENST00000565316 ZAP70P43403 619 aa20.97■□□□□ 0.95
CLN3-216ENST00000565316 SLAIN1Q8ND83 568 aa20.97■□□□□ 0.95
CLN3-216ENST00000565316 SMCR8Q8TEV9 937 aaPredicted RBP20.97■□□□□ 0.95
CLN3-216ENST00000565316 EAF2Q96CJ1 260 aaPredicted RBP20.97■□□□□ 0.95
CLN3-216ENST00000565316 PIH1D3Q9NQM4 214 aaKnown RBP20.97■□□□□ 0.95
CLN3-216ENST00000565316 MAST2Q6P0Q8 1798 aa20.96■□□□□ 0.95
CLN3-216ENST00000565316 CCL5P13501 91 aa20.96■□□□□ 0.95
CLN3-216ENST00000565316 SH3D19Q5HYK7 790 aa20.96■□□□□ 0.95
CLN3-216ENST00000565316 CEP85Q6P2H3 762 aa20.96■□□□□ 0.95
CLN3-216ENST00000565316 NKX2-3Q8TAU0 364 aa20.96■□□□□ 0.95
CLN3-216ENST00000565316 TGFBRAP1Q8WUH2 860 aa20.96■□□□□ 0.95
CLN3-216ENST00000565316 TLR7Q9NYK1 1049 aaKnown RBP20.96■□□□□ 0.95
CLN3-216ENST00000565316 PNMA3Q9UL41 463 aa20.96■□□□□ 0.95
CLN3-216ENST00000565316 FLT1P17948 1338 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 ZBED9Q6R2W3 1325 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 GJB1P08034 283 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 GJA8P48165 433 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 FLT3LGP49771 235 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 IRF5Q13568 498 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 HABP4Q5JVS0 413 aaKnown RBP20.95■□□□□ 0.94
CLN3-216ENST00000565316 DIEXFQ68CQ4 756 aaKnown RBP20.95■□□□□ 0.94
CLN3-216ENST00000565316 FOXP4Q8IVH2 680 aaPredicted RBP20.95■□□□□ 0.94
CLN3-216ENST00000565316 MAPKAPK5Q8IW41 473 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 WDR18Q9BV38 432 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 CCDC8Q9H0W5 538 aaPredicted RBP20.95■□□□□ 0.94
CLN3-216ENST00000565316 MGAMO43451 1857 aa20.95■□□□□ 0.94
CLN3-216ENST00000565316 SIPA1L1O43166 1804 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 HMGCS2P54868 508 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 UBXN2AP68543 259 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 FAM110CQ1W6H9 321 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 ANKRD13CQ8N6S4 541 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 PXYLP1Q8TE99 480 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 DNAJC18Q9H819 358 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 AS3MTQ9HBK9 375 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 LOC285556D6RIA3 1793 aa20.94■□□□□ 0.94
CLN3-216ENST00000565316 TNPO2O14787 897 aaKnown RBP20.93■□□□□ 0.94
CLN3-216ENST00000565316 ADCY3O60266 1144 aa20.93■□□□□ 0.94
CLN3-216ENST00000565316 GCLCP48506 637 aaPredicted RBP20.93■□□□□ 0.94
CLN3-216ENST00000565316 PABPC4Q13310 644 aaKnown RBP eCLIP20.93■□□□□ 0.943e-6■■■■□ 26.6
CLN3-216ENST00000565316 UBE2Q1Q7Z7E8 422 aa20.93■□□□□ 0.94
CLN3-216ENST00000565316 GINM1Q9NU53 330 aa20.93■□□□□ 0.94
CLN3-216ENST00000565316 BIN2Q9UBW5 565 aaPredicted RBP20.93■□□□□ 0.94
CLN3-216ENST00000565316 ASNSP08243 561 aa20.92■□□□□ 0.94
CLN3-216ENST00000565316 JAG1P78504 1218 aa20.92■□□□□ 0.94
CLN3-216ENST00000565316 TMED8Q6PL24 325 aaPredicted RBP20.92■□□□□ 0.94
CLN3-216ENST00000565316 PANK1Q8TE04 598 aa20.92■□□□□ 0.94
CLN3-216ENST00000565316 RNF208Q9H0X6 261 aa20.92■□□□□ 0.94
CLN3-216ENST00000565316 PALD1Q9ULE6 856 aa20.92■□□□□ 0.94
CLN3-216ENST00000565316 CYP7A1P22680 504 aa20.91■□□□□ 0.94
CLN3-216ENST00000565316 BACE1P56817 501 aa20.91■□□□□ 0.94
CLN3-216ENST00000565316 DYNLL1P63167 89 aaKnown RBP20.91■□□□□ 0.94
CLN3-216ENST00000565316 CERS3Q8IU89 383 aa20.91■□□□□ 0.94
CLN3-216ENST00000565316 ERC1Q8IUD2 1116 aa20.91■□□□□ 0.94
CLN3-216ENST00000565316 ASCC2Q9H1I8 757 aaPredicted RBP20.91■□□□□ 0.94
CLN3-216ENST00000565316 ATAD5Q96QE3 1844 aa20.91■□□□□ 0.94
CLN3-216ENST00000565316 FOCADQ5VW36 1801 aa20.9■□□□□ 0.94
CLN3-216ENST00000565316 COA7Q96BR5 231 aa20.9■□□□□ 0.94
CLN3-216ENST00000565316 UNC93B1Q9H1C4 597 aa20.9■□□□□ 0.94
CLN3-216ENST00000565316 EXOC6BQ9Y2D4 811 aa20.9■□□□□ 0.94
CLN3-216ENST00000565316 CDK5RAP2Q96SN8 1893 aa20.9■□□□□ 0.94
CLN3-216ENST00000565316 MYO5AQ9Y4I1 1855 aaKnown RBP20.9■□□□□ 0.94
CLN3-216ENST00000565316 IDH1O75874 414 aaKnown RBP20.89■□□□□ 0.93
CLN3-216ENST00000565316 ELNP15502 786 aa20.89■□□□□ 0.93
CLN3-216ENST00000565316 HOXA7P31268 230 aaPredicted RBP20.89■□□□□ 0.93
CLN3-216ENST00000565316 CRACR2BQ8N4Y2 399 aaPredicted RBP20.89■□□□□ 0.93
CLN3-216ENST00000565316 U2AF1L4Q8WU68 220 aaKnown RBP20.89■□□□□ 0.93
CLN3-216ENST00000565316 C19orf81C9J6K1 198 aa20.88■□□□□ 0.93
CLN3-216ENST00000565316 INHAP05111 366 aa20.88■□□□□ 0.93
CLN3-216ENST00000565316 HLA-DOAP06340 250 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 132.7 ms