RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 MTFR1Q15390 333 aa17.36■□□□□ 0.37
SNHG1-213ENST00000540725 TTC39AQ5SRH9 613 aa17.36■□□□□ 0.37
SNHG1-213ENST00000540725 FTSJ3Q8IY81 847 aaKnown RBP17.36■□□□□ 0.37
SNHG1-213ENST00000540725 DBNDD2Q9BQY9 259 aa17.36■□□□□ 0.37
SNHG1-213ENST00000540725 C1orf115Q9H7X2 142 aa17.36■□□□□ 0.37
SNHG1-213ENST00000540725 SURF6O75683 361 aaKnown RBP17.35■□□□□ 0.37
SNHG1-213ENST00000540725 PRKCZQ05513 592 aa17.35■□□□□ 0.37
SNHG1-213ENST00000540725 CCDC158Q5M9N0 1113 aa17.35■□□□□ 0.37
SNHG1-213ENST00000540725 SH3RF3Q8TEJ3 882 aaPredicted RBP17.35■□□□□ 0.37
SNHG1-213ENST00000540725 NOL10Q9BSC4 688 aaKnown RBP17.35■□□□□ 0.37
SNHG1-213ENST00000540725 NAA16Q6N069 864 aaPredicted RBP17.34■□□□□ 0.37
SNHG1-213ENST00000540725 ITPRIPQ8IWB1 547 aa17.34■□□□□ 0.37
SNHG1-213ENST00000540725 SMCR8Q8TEV9 937 aaPredicted RBP17.34■□□□□ 0.37
SNHG1-213ENST00000540725 AGTPBP1Q9UPW5 1226 aa17.34■□□□□ 0.37
SNHG1-213ENST00000540725 MYH1P12882 1939 aa17.33■□□□□ 0.37
SNHG1-213ENST00000540725 RLBP1P12271 317 aa17.33■□□□□ 0.36
SNHG1-213ENST00000540725 SHISA4Q96DD7 197 aa17.33■□□□□ 0.36
SNHG1-213ENST00000540725 AATFQ9NY61 560 aaKnown RBP eCLIP17.33■□□□□ 0.361e-323■■■□□ 16.4
SNHG1-213ENST00000540725 PCDH10Q9P2E7 1040 aa17.33■□□□□ 0.36
SNHG1-213ENST00000540725 BIN2Q9UBW5 565 aaPredicted RBP17.33■□□□□ 0.36
SNHG1-213ENST00000540725 HERC5Q9UII4 1024 aaKnown RBP17.33■□□□□ 0.36
SNHG1-213ENST00000540725 GABRQQ9UN88 632 aa17.33■□□□□ 0.36
SNHG1-213ENST00000540725 BAG3O95817 575 aa17.32■□□□□ 0.36
SNHG1-213ENST00000540725 CYP2E1P05181 493 aaPredicted RBP17.32■□□□□ 0.36
SNHG1-213ENST00000540725 PLCG2P16885 1265 aa17.32■□□□□ 0.36
SNHG1-213ENST00000540725 CAP2P40123 477 aa17.32■□□□□ 0.36
SNHG1-213ENST00000540725 SPP2Q13103 211 aa17.32■□□□□ 0.36
SNHG1-213ENST00000540725 TREML2Q5T2D2 321 aa17.32■□□□□ 0.36
SNHG1-213ENST00000540725 PROCA1Q8NCQ7 364 aaPredicted RBP17.32■□□□□ 0.36
SNHG1-213ENST00000540725 SLAIN1Q8ND83 568 aa17.32■□□□□ 0.36
SNHG1-213ENST00000540725 NOP58Q9Y2X3 529 aaKnown RBP17.32■□□□□ 0.36
SNHG1-213ENST00000540725 ZBTB7BO15156 539 aaPredicted RBP17.31■□□□□ 0.36
SNHG1-213ENST00000540725 CCL5P13501 91 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 PPP4CP60510 307 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 UBXN2AP68543 259 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 RRP1BQ14684 758 aaKnown RBP17.31■□□□□ 0.36
SNHG1-213ENST00000540725 HABP4Q5JVS0 413 aaKnown RBP17.31■□□□□ 0.36
SNHG1-213ENST00000540725 ADGRA1Q86SQ6 560 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 MIER1Q8N108 512 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 ZNF280CQ8ND82 737 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 ZNF512BQ96KM6 892 aaPredicted RBP17.31■□□□□ 0.36
SNHG1-213ENST00000540725 TBC1D2Q9BYX2 928 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 DHX36Q9H2U1 1008 aaKnown RBP17.31■□□□□ 0.36
SNHG1-213ENST00000540725 PI4KBQ9UBF8 816 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 DBNLQ9UJU6 430 aaKnown RBP17.31■□□□□ 0.36
SNHG1-213ENST00000540725 PNMA3Q9UL41 463 aa17.31■□□□□ 0.36
SNHG1-213ENST00000540725 TNPO2O14787 897 aaKnown RBP17.3■□□□□ 0.36
SNHG1-213ENST00000540725 GJB1P08034 283 aa17.3■□□□□ 0.36
SNHG1-213ENST00000540725 ZAP70P43403 619 aa17.3■□□□□ 0.36
SNHG1-213ENST00000540725 HMGCS2P54868 508 aa17.3■□□□□ 0.36
SNHG1-213ENST00000540725 MAPKAPK5Q8IW41 473 aa17.3■□□□□ 0.36
SNHG1-213ENST00000540725 ANKRD13CQ8N6S4 541 aa17.3■□□□□ 0.36
SNHG1-213ENST00000540725 NKX2-3Q8TAU0 364 aa17.3■□□□□ 0.36
SNHG1-213ENST00000540725 TGFBRAP1Q8WUH2 860 aa17.3■□□□□ 0.36
SNHG1-213ENST00000540725 RNF208Q9H0X6 261 aa17.3■□□□□ 0.36
SNHG1-213ENST00000540725 TLR7Q9NYK1 1049 aaKnown RBP17.3■□□□□ 0.36
SNHG1-213ENST00000540725 USP17L5A8MUK1 530 aa17.29■□□□□ 0.36
SNHG1-213ENST00000540725 ADCY3O60266 1144 aa17.29■□□□□ 0.36
SNHG1-213ENST00000540725 GJA8P48165 433 aa17.29■□□□□ 0.36
SNHG1-213ENST00000540725 FLT3LGP49771 235 aa17.29■□□□□ 0.36
SNHG1-213ENST00000540725 CCDC8Q9H0W5 538 aaPredicted RBP17.29■□□□□ 0.36
SNHG1-213ENST00000540725 PIH1D3Q9NQM4 214 aaKnown RBP17.29■□□□□ 0.36
SNHG1-213ENST00000540725 FLT1P17948 1338 aa17.29■□□□□ 0.36
SNHG1-213ENST00000540725 IGSF3O75054 1194 aa17.28■□□□□ 0.36
SNHG1-213ENST00000540725 PABPC4Q13310 644 aaKnown RBP eCLIP17.28■□□□□ 0.36
SNHG1-213ENST00000540725 FAM110CQ1W6H9 321 aa17.28■□□□□ 0.36
SNHG1-213ENST00000540725 EAF2Q96CJ1 260 aaPredicted RBP17.28■□□□□ 0.36
SNHG1-213ENST00000540725 AS3MTQ9HBK9 375 aa17.28■□□□□ 0.36
SNHG1-213ENST00000540725 ELNP15502 786 aa17.28■□□□□ 0.36
SNHG1-213ENST00000540725 IRF5Q13568 498 aa17.28■□□□□ 0.36
SNHG1-213ENST00000540725 SH3D19Q5HYK7 790 aa17.28■□□□□ 0.36
SNHG1-213ENST00000540725 UNC93B1Q9H1C4 597 aa17.28■□□□□ 0.36
SNHG1-213ENST00000540725 DNAJC18Q9H819 358 aa17.28■□□□□ 0.36
SNHG1-213ENST00000540725 INHAP05111 366 aa17.27■□□□□ 0.35
SNHG1-213ENST00000540725 ASNSP08243 561 aa17.27■□□□□ 0.35
SNHG1-213ENST00000540725 GCLCP48506 637 aaPredicted RBP17.27■□□□□ 0.35
SNHG1-213ENST00000540725 DYNLL1P63167 89 aaKnown RBP17.27■□□□□ 0.35
SNHG1-213ENST00000540725 CEP85Q6P2H3 762 aa17.27■□□□□ 0.35
SNHG1-213ENST00000540725 METTL16Q86W50 562 aaKnown RBP17.27■□□□□ 0.35
SNHG1-213ENST00000540725 FOXP4Q8IVH2 680 aaPredicted RBP17.27■□□□□ 0.35
SNHG1-213ENST00000540725 CRACR2BQ8N4Y2 399 aaPredicted RBP17.27■□□□□ 0.35
SNHG1-213ENST00000540725 PXYLP1Q8TE99 480 aa17.27■□□□□ 0.35
SNHG1-213ENST00000540725 COA7Q96BR5 231 aa17.27■□□□□ 0.35
SNHG1-213ENST00000540725 WDR18Q9BV38 432 aa17.27■□□□□ 0.35
SNHG1-213ENST00000540725 TRIM34Q9BYJ4 488 aa17.27■□□□□ 0.35
SNHG1-213ENST00000540725 ASCC2Q9H1I8 757 aaPredicted RBP17.27■□□□□ 0.35
SNHG1-213ENST00000540725 PALD1Q9ULE6 856 aa17.27■□□□□ 0.35
SNHG1-213ENST00000540725 PLXNB2O15031 1838 aa17.26■□□□□ 0.35
SNHG1-213ENST00000540725 ZBED9Q6R2W3 1325 aa17.26■□□□□ 0.35
SNHG1-213ENST00000540725 H0YGN5 161 aa17.26■□□□□ 0.35
SNHG1-213ENST00000540725 IDH1O75874 414 aaKnown RBP17.26■□□□□ 0.35
SNHG1-213ENST00000540725 CYP7A1P22680 504 aa17.26■□□□□ 0.35
SNHG1-213ENST00000540725 JAG1P78504 1218 aa17.26■□□□□ 0.35
SNHG1-213ENST00000540725 MTMR2Q13614 643 aa17.26■□□□□ 0.35
SNHG1-213ENST00000540725 UBE2Q1Q7Z7E8 422 aa17.26■□□□□ 0.35
SNHG1-213ENST00000540725 U2AF1L4Q8WU68 220 aaKnown RBP17.26■□□□□ 0.35
SNHG1-213ENST00000540725 SAP30BPQ9UHR5 308 aaKnown RBP17.26■□□□□ 0.35
SNHG1-213ENST00000540725 TAOK2Q9UL54 1235 aa17.26■□□□□ 0.35
SNHG1-213ENST00000540725 GDF11O95390 407 aa17.25■□□□□ 0.35
SNHG1-213ENST00000540725 BACE1P56817 501 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms