RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 WASF1Q92558 559 aa22.14■■□□□ 1.13
VPS28-213ENST00000530983 KRT23Q9C075 422 aa22.14■■□□□ 1.13
VPS28-213ENST00000530983 MORC2Q9Y6X9 1032 aaPredicted RBP22.14■■□□□ 1.13
VPS28-213ENST00000530983 TMEM232C9JQI7 657 aa22.13■■□□□ 1.13
VPS28-213ENST00000530983 GRIN1Q05586 938 aa22.13■■□□□ 1.13
VPS28-213ENST00000530983 DIS3L2Q8IYB7 885 aaKnown RBP22.13■■□□□ 1.13
VPS28-213ENST00000530983 KCNJ14Q9UNX9 436 aa22.13■■□□□ 1.13
VPS28-213ENST00000530983 ELOA2Q8IYF1 753 aaPredicted RBP22.13■■□□□ 1.13
VPS28-213ENST00000530983 ZKSCAN3Q9BRR0 538 aa22.13■■□□□ 1.13
VPS28-213ENST00000530983 MYO1BO43795 1136 aa22.12■■□□□ 1.13
VPS28-213ENST00000530983 TUBB4AP04350 444 aa22.12■■□□□ 1.13
VPS28-213ENST00000530983 LCORLQ8N3X6 602 aa22.12■■□□□ 1.13
VPS28-213ENST00000530983 STAG1Q8WVM7 1258 aa22.12■■□□□ 1.13
VPS28-213ENST00000530983 INTS13Q9NVM9 706 aa22.12■■□□□ 1.13
VPS28-213ENST00000530983 FBXO2Q9UK22 296 aaPredicted RBP22.12■■□□□ 1.13
VPS28-213ENST00000530983 IL6STP40189 918 aaPredicted RBP22.12■■□□□ 1.13
VPS28-213ENST00000530983 PTPN21Q16825 1174 aa22.12■■□□□ 1.13
VPS28-213ENST00000530983 RRP12Q5JTH9 1297 aaKnown RBP22.12■■□□□ 1.13
VPS28-213ENST00000530983 ZNF771Q7L3S4 317 aaPredicted RBP22.12■■□□□ 1.13
VPS28-213ENST00000530983 LRRN4CLQ8ND94 238 aa22.12■■□□□ 1.13
VPS28-213ENST00000530983 RTN1Q16799 776 aa22.11■■□□□ 1.13
VPS28-213ENST00000530983 BTG4Q9NY30 223 aa22.11■■□□□ 1.13
VPS28-213ENST00000530983 DISP2A7MBM2 1401 aa22.11■■□□□ 1.13
VPS28-213ENST00000530983 PTPREP23469 700 aa22.11■■□□□ 1.13
VPS28-213ENST00000530983 ETF1P62495 437 aaKnown RBP22.11■■□□□ 1.13
VPS28-213ENST00000530983 GOLGA8FQ08AF8 430 aa22.11■■□□□ 1.13
VPS28-213ENST00000530983 GOLGA8DPQ0D2H9 430 aa22.11■■□□□ 1.13
VPS28-213ENST00000530983 WTAPQ15007 396 aa22.11■■□□□ 1.13
VPS28-213ENST00000530983 SAFBQ15424 915 aaKnown RBP eCLIP22.11■■□□□ 1.13
VPS28-213ENST00000530983 TRIM22Q8IYM9 498 aa22.11■■□□□ 1.13
VPS28-213ENST00000530983 FOXP1Q9H334 677 aaPredicted RBP22.11■■□□□ 1.13
VPS28-213ENST00000530983 ZNF335Q9H4Z2 1342 aaPredicted RBP22.11■■□□□ 1.13
VPS28-213ENST00000530983 TDO2P48775 406 aa22.1■■□□□ 1.13
VPS28-213ENST00000530983 GABPB1Q06547 395 aaPredicted RBP22.1■■□□□ 1.13
VPS28-213ENST00000530983 AK7Q96M32 723 aa22.1■■□□□ 1.13
VPS28-213ENST00000530983 SEC31BQ9NQW1 1179 aa22.1■■□□□ 1.13
VPS28-213ENST00000530983 MAN1B1Q9UKM7 699 aa22.1■■□□□ 1.13
VPS28-213ENST00000530983 SLC4A4Q9Y6R1 1079 aa22.1■■□□□ 1.13
VPS28-213ENST00000530983 PNPLA7Q6ZV29 1317 aa22.1■■□□□ 1.13
VPS28-213ENST00000530983 CCP110O43303 1012 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 TOP1P11387 765 aaKnown RBP22.09■■□□□ 1.13
VPS28-213ENST00000530983 MYH6P13533 1939 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 POSTNQ15063 836 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 RILPL1Q5EBL4 403 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 HOMER1Q86YM7 354 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 TMEM139Q8IV31 216 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 CMTR1Q8N1G2 835 aaKnown RBP22.09■■□□□ 1.13
VPS28-213ENST00000530983 CCDC82Q8N4S0 544 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 TOMM22Q9NS69 142 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 PLCH1Q4KWH8 1693 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 PRR29P0C7W0 189 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 GNAT2P19087 354 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 NR5A1Q13285 461 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 SART3Q15020 963 aaKnown RBP22.09■■□□□ 1.13
VPS28-213ENST00000530983 NT5DC1Q5TFE4 455 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 SUSD4Q5VX71 490 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 TRIM65Q6PJ69 517 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 CRACR2BQ8N4Y2 399 aaPredicted RBP22.09■■□□□ 1.13
VPS28-213ENST00000530983 MPHOSPH8Q99549 860 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 NACAP1Q9BZK3 213 aa22.09■■□□□ 1.13
VPS28-213ENST00000530983 PHLPP2Q6ZVD8 1323 aa22.08■■□□□ 1.13
VPS28-213ENST00000530983 POLR2DO15514 142 aaKnown RBP22.08■■□□□ 1.13
VPS28-213ENST00000530983 BCAMP50895 628 aa22.08■■□□□ 1.13
VPS28-213ENST00000530983 ERCC6LQ2NKX8 1250 aa22.08■■□□□ 1.13
VPS28-213ENST00000530983 UTP14AQ9BVJ6 771 aaKnown RBP22.08■■□□□ 1.13
VPS28-213ENST00000530983 PCDHB6Q9Y5E3 794 aa22.08■■□□□ 1.13
VPS28-213ENST00000530983 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.08■■□□□ 1.138e-7■■□□□ 13.6
VPS28-213ENST00000530983 NPHP1O15259 732 aa22.08■■□□□ 1.12
VPS28-213ENST00000530983 FANCGO15287 622 aa22.08■■□□□ 1.12
VPS28-213ENST00000530983 DEXIO95424 95 aa22.08■■□□□ 1.12
VPS28-213ENST00000530983 SLFN14P0C7P3 912 aa22.08■■□□□ 1.12
VPS28-213ENST00000530983 REXO1L1PQ8IX06 675 aa22.08■■□□□ 1.12
VPS28-213ENST00000530983 SERTAD1Q9UHV2 236 aa22.08■■□□□ 1.12
VPS28-213ENST00000530983 DNAI1Q9UI46 699 aa22.08■■□□□ 1.12
VPS28-213ENST00000530983 HOOK1Q9UJC3 728 aaKnown RBP22.08■■□□□ 1.12
VPS28-213ENST00000530983 SARSP49591 514 aaKnown RBP22.07■■□□□ 1.12
VPS28-213ENST00000530983 FMR1Q06787 632 aaKnown RBP eCLIP22.07■■□□□ 1.12
VPS28-213ENST00000530983 HSP90AA4PQ58FG1 418 aa22.07■■□□□ 1.12
VPS28-213ENST00000530983 FAM53CQ9NYF3 392 aa22.07■■□□□ 1.12
VPS28-213ENST00000530983 MIGA1Q8NAN2 632 aa22.07■■□□□ 1.12
VPS28-213ENST00000530983 OXER1Q8TDS5 423 aa22.07■■□□□ 1.12
VPS28-213ENST00000530983 MTA3Q9BTC8 594 aa22.07■■□□□ 1.12
VPS28-213ENST00000530983 ZNF446Q9NWS9 450 aa22.07■■□□□ 1.12
VPS28-213ENST00000530983 ERICH2A1L162 156 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 H2AFXP16104 143 aaPredicted RBP22.06■■□□□ 1.12
VPS28-213ENST00000530983 ZNF18P17022 549 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 TBX2Q13207 712 aaPredicted RBP22.06■■□□□ 1.12
VPS28-213ENST00000530983 ZNF654Q8IZM8 581 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 ZNF579Q8NAF0 562 aaKnown RBP22.06■■□□□ 1.12
VPS28-213ENST00000530983 FANCBQ8NB91 859 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 MORC3Q14149 939 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 ZNF827Q17R98 1081 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 FCHSD1Q86WN1 690 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 GRAMD1CQ8IYS0 662 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 NFE2L3Q9Y4A8 694 aa22.06■■□□□ 1.12
VPS28-213ENST00000530983 SRPRBQ9Y5M8 271 aaKnown RBP22.06■■□□□ 1.12
VPS28-213ENST00000530983 PHLPP1O60346 1717 aa22.05■■□□□ 1.12
VPS28-213ENST00000530983 CCDC196A0A1B0GTZ2 297 aa22.05■■□□□ 1.12
VPS28-213ENST00000530983 RCAN1P53805 252 aa22.05■■□□□ 1.12
VPS28-213ENST00000530983 KRT222Q8N1A0 295 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms