RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	PRDM10	Q9NQV6	1147 aa		3.47	□□□□□ -1.85
CD44-212	ENST00000524922	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	3.47	□□□□□ -1.85
CD44-212	ENST00000524922	SNX11	Q9Y5W9	270 aa		3.47	□□□□□ -1.85
CD44-212	ENST00000524922	CSAD	Q9Y600	493 aa		3.47	□□□□□ -1.85
CD44-212	ENST00000524922	PITPNM2	Q9BZ72	1349 aa		3.46	□□□□□ -1.85
CD44-212	ENST00000524922	TMEM265	A0A087WTH1	108 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	ZNF503-AS2	A6NEH8	195 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	DCDC2C	A8MYV0	355 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	FANCG	O15287	622 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	SLITRK5	O94991	958 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	MAPK1	P28482	360 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	GSTT1	P30711	240 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	CAP2	P40123	477 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	CDK8	P49336	464 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	SLBP	Q14493	270 aa	Known RBP eCLIP	3.46	□□□□□ -1.86
CD44-212	ENST00000524922	ZNF648	Q5T619	568 aa	Predicted RBP	3.46	□□□□□ -1.86
CD44-212	ENST00000524922	SLC23A3	Q6PIS1	610 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	LRFN4	Q6PJG9	635 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	3.46	□□□□□ -1.86
CD44-212	ENST00000524922	HRASLS5	Q96KN8	279 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	EMILIN2	Q9BXX0	1053 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	KRTAP4-9	Q9BYQ8	210 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	RC3H2	Q9HBD1	1191 aa	Known RBP	3.46	□□□□□ -1.86
CD44-212	ENST00000524922	PRDM7	Q9NQW5	492 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	SEMA3G	Q9NS98	782 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	C19orf73	Q9NVV2	129 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	RB1CC1	Q8TDY2	1594 aa		3.46	□□□□□ -1.86
CD44-212	ENST00000524922	PRR33	A8MZF0	331 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	P4HB	P07237	508 aa	Known RBP	3.45	□□□□□ -1.86
CD44-212	ENST00000524922	ZNF865	P0CJ78	1059 aa	Predicted RBP	3.45	□□□□□ -1.86
CD44-212	ENST00000524922	NKG7	Q16617	165 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	PCNX4	Q63HM2	1172 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	LLGL2	Q6P1M3	1020 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	C22orf34	Q6ZV56	151 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	ARMCX6	Q7L4S7	300 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	FAM168A	Q92567	244 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	CEP44	Q9C0F1	390 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	C12orf49	Q9H741	205 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	RNF19A	Q9NV58	838 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	PPP4R2	Q9NY27	417 aa		3.45	□□□□□ -1.86
CD44-212	ENST00000524922	BIN2	Q9UBW5	565 aa	Predicted RBP	3.45	□□□□□ -1.86
CD44-212	ENST00000524922	NACAD	O15069	1562 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	KRTAP9-7	A8MTY7	169 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	GFRA2	O00451	464 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	GIPC1	O14908	333 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	ITIH2	P19823	946 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	PDE4C	Q08493	712 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	FYB2	Q5VWT5	728 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	SPOCD1	Q6ZMY3	1216 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	RIN3	Q8TB24	985 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	TMEM40	Q8WWA1	233 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	CBX8	Q9HC52	389 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	CYP8B1	Q9UNU6	501 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	CTNND2	Q9UQB3	1225 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	ST14	Q9Y5Y6	855 aa		3.44	□□□□□ -1.86
CD44-212	ENST00000524922	BIN1	O00499	593 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	LRIG2	O94898	1065 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	KRT1	P04264	644 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	USP17L7	P0C7H9	530 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	MAPK8	P45983	427 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	CLCN7	P51798	805 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	ZNF124	Q15973	351 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	ANGEL2	Q5VTE6	544 aa	Known RBP	3.43	□□□□□ -1.86
CD44-212	ENST00000524922	ALG1L	Q6GMV1	187 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	PI4K2B	Q8TCG2	481 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	PLPPR2	Q96GM1	343 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	ACSBG1	Q96GR2	724 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	WNT10A	Q9GZT5	417 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	FAM8A1	Q9UBU6	413 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	PCDHA4	Q9UN74	947 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	TIMELESS	Q9UNS1	1208 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	MAPK8IP1	Q9UQF2	711 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	CAPN6	Q9Y6Q1	641 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	IVNS1ABP	Q9Y6Y0	642 aa		3.43	□□□□□ -1.86
CD44-212	ENST00000524922	ZP2	Q05996	745 aa		3.42	□□□□□ -1.86
CD44-212	ENST00000524922	LRRC14	Q15048	493 aa		3.42	□□□□□ -1.86
CD44-212	ENST00000524922	SV2B	Q7L1I2	683 aa		3.42	□□□□□ -1.86
CD44-212	ENST00000524922	ASB11	Q8WXH4	323 aa		3.42	□□□□□ -1.86
CD44-212	ENST00000524922	SSU72	Q9NP77	194 aa	Known RBP	3.42	□□□□□ -1.86
CD44-212	ENST00000524922	LMCD1	Q9NZU5	365 aa		3.42	□□□□□ -1.86
CD44-212	ENST00000524922	GTF2IRD1	Q9UHL9	959 aa		3.42	□□□□□ -1.86
CD44-212	ENST00000524922	DBX1	A6NMT0	343 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	HNRNPU	Q00839	825 aa	Known RBP eCLIP	3.41	□□□□□ -1.86
CD44-212	ENST00000524922	ZSWIM9	Q86XI8	627 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	C1QL4	Q86Z23	238 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-212	ENST00000524922	KCT2	Q8NC54	265 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	HSPA12B	Q96MM6	686 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	FOXQ1	Q9C009	403 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	ATP13A1	Q9HD20	1204 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	PRDM5	Q9NQX1	630 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-212	ENST00000524922	PCDHB5	Q9Y5E4	795 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	SNCAIP	Q9Y6H5	919 aa		3.41	□□□□□ -1.86
CD44-212	ENST00000524922	FARP2	O94887	1054 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-212	ENST00000524922	CST3	P01034	146 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-212	ENST00000524922	LDHB	P07195	334 aa	Known RBP	3.4	□□□□□ -1.87
CD44-212	ENST00000524922	GNA15	P30679	374 aa		3.4	□□□□□ -1.87
CD44-212	ENST00000524922	RPS26	P62854	115 aa	Known RBP	3.4	□□□□□ -1.87
CD44-212	ENST00000524922	KCNA1	Q09470	495 aa		3.4	□□□□□ -1.87
CD44-212	ENST00000524922	IKZF1	Q13422	519 aa		3.4	□□□□□ -1.87

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