RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 BAG3O95817 575 aa28.52■■■□□ 2.16
COL27A1-208ENST00000494780 UBXN2AP68543 259 aa28.52■■■□□ 2.16
COL27A1-208ENST00000494780 NAA16Q6N069 864 aaPredicted RBP28.52■■■□□ 2.16
COL27A1-208ENST00000494780 PROCA1Q8NCQ7 364 aaPredicted RBP28.52■■■□□ 2.16
COL27A1-208ENST00000494780 SLAIN1Q8ND83 568 aa28.52■■■□□ 2.16
COL27A1-208ENST00000494780 SNRKQ9NRH2 765 aa28.52■■■□□ 2.16
COL27A1-208ENST00000494780 HERC5Q9UII4 1024 aaKnown RBP28.52■■■□□ 2.16
COL27A1-208ENST00000494780 IGSF3O75054 1194 aa28.51■■■□□ 2.15
COL27A1-208ENST00000494780 SURF6O75683 361 aaKnown RBP28.51■■■□□ 2.15
COL27A1-208ENST00000494780 PLCG2P16885 1265 aa28.51■■■□□ 2.15
COL27A1-208ENST00000494780 CAP2P40123 477 aa28.51■■■□□ 2.15
COL27A1-208ENST00000494780 FTSJ3Q8IY81 847 aaKnown RBP28.51■■■□□ 2.15
COL27A1-208ENST00000494780 SH3RF3Q8TEJ3 882 aaPredicted RBP28.51■■■□□ 2.15
COL27A1-208ENST00000494780 ZNF512BQ96KM6 892 aaPredicted RBP28.51■■■□□ 2.15
COL27A1-208ENST00000494780 DHX36Q9H2U1 1008 aaKnown RBP28.51■■■□□ 2.15
COL27A1-208ENST00000494780 BIN2Q9UBW5 565 aaPredicted RBP28.51■■■□□ 2.15
COL27A1-208ENST00000494780 PNMA3Q9UL41 463 aa28.51■■■□□ 2.15
COL27A1-208ENST00000494780 CCL5P13501 91 aa28.5■■■□□ 2.15
COL27A1-208ENST00000494780 HNRNPUQ00839 825 aaKnown RBP eCLIP28.5■■■□□ 2.15
COL27A1-208ENST00000494780 SPP2Q13103 211 aa28.5■■■□□ 2.15
COL27A1-208ENST00000494780 ZNF280CQ8ND82 737 aa28.5■■■□□ 2.15
COL27A1-208ENST00000494780 SHISA4Q96DD7 197 aa28.5■■■□□ 2.15
COL27A1-208ENST00000494780 PI4KBQ9UBF8 816 aa28.5■■■□□ 2.15
COL27A1-208ENST00000494780 GABRQQ9UN88 632 aa28.5■■■□□ 2.15
COL27A1-208ENST00000494780 NOP58Q9Y2X3 529 aaKnown RBP28.5■■■□□ 2.15
COL27A1-208ENST00000494780 MAST2Q6P0Q8 1798 aa28.5■■■□□ 2.15
COL27A1-208ENST00000494780 GJB1P08034 283 aa28.49■■■□□ 2.15
COL27A1-208ENST00000494780 PPP4CP60510 307 aa28.49■■■□□ 2.15
COL27A1-208ENST00000494780 TREML2Q5T2D2 321 aa28.49■■■□□ 2.15
COL27A1-208ENST00000494780 C1orf115Q9H7X2 142 aa28.49■■■□□ 2.15
COL27A1-208ENST00000494780 AATFQ9NY61 560 aaKnown RBP eCLIP28.49■■■□□ 2.15
COL27A1-208ENST00000494780 USP17L5A8MUK1 530 aa28.48■■■□□ 2.15
COL27A1-208ENST00000494780 CYP2E1P05181 493 aaPredicted RBP28.48■■■□□ 2.15
COL27A1-208ENST00000494780 GJA8P48165 433 aa28.48■■■□□ 2.15
COL27A1-208ENST00000494780 RNF208Q9H0X6 261 aa28.48■■■□□ 2.15
COL27A1-208ENST00000494780 TNPO2O14787 897 aaKnown RBP28.47■■■□□ 2.15
COL27A1-208ENST00000494780 ZBTB7BO15156 539 aaPredicted RBP28.47■■■□□ 2.15
COL27A1-208ENST00000494780 FLT3LGP49771 235 aa28.47■■■□□ 2.15
COL27A1-208ENST00000494780 RRP1BQ14684 758 aaKnown RBP28.47■■■□□ 2.15
COL27A1-208ENST00000494780 ITPRIPQ8IWB1 547 aa28.47■■■□□ 2.15
COL27A1-208ENST00000494780 ADCY3O60266 1144 aa28.46■■■□□ 2.15
COL27A1-208ENST00000494780 PABPC4Q13310 644 aaKnown RBP eCLIP28.46■■■□□ 2.15
COL27A1-208ENST00000494780 IRF5Q13568 498 aa28.46■■■□□ 2.15
COL27A1-208ENST00000494780 ANKRD13CQ8N6S4 541 aa28.46■■■□□ 2.15
COL27A1-208ENST00000494780 PXYLP1Q8TE99 480 aa28.46■■■□□ 2.15
COL27A1-208ENST00000494780 AS3MTQ9HBK9 375 aa28.46■■■□□ 2.15
COL27A1-208ENST00000494780 LOC285556D6RIA3 1793 aa28.46■■■□□ 2.15
COL27A1-208ENST00000494780 ATAD5Q96QE3 1844 aa28.46■■■□□ 2.15
COL27A1-208ENST00000494780 ZAP70P43403 619 aa28.45■■■□□ 2.14
COL27A1-208ENST00000494780 HMGCS2P54868 508 aa28.45■■■□□ 2.14
COL27A1-208ENST00000494780 FAM110CQ1W6H9 321 aa28.45■■■□□ 2.14
COL27A1-208ENST00000494780 SH3D19Q5HYK7 790 aa28.45■■■□□ 2.14
COL27A1-208ENST00000494780 TGFBRAP1Q8WUH2 860 aa28.45■■■□□ 2.14
COL27A1-208ENST00000494780 RLBP1P12271 317 aa28.44■■■□□ 2.14
COL27A1-208ENST00000494780 GCLCP48506 637 aaPredicted RBP28.44■■■□□ 2.14
COL27A1-208ENST00000494780 ADGRA1Q86SQ6 560 aa28.44■■■□□ 2.14
COL27A1-208ENST00000494780 MAPKAPK5Q8IW41 473 aa28.44■■■□□ 2.14
COL27A1-208ENST00000494780 COA7Q96BR5 231 aa28.44■■■□□ 2.14
COL27A1-208ENST00000494780 DBNLQ9UJU6 430 aaKnown RBP28.44■■■□□ 2.14
COL27A1-208ENST00000494780 FLT1P17948 1338 aa28.43■■■□□ 2.14
COL27A1-208ENST00000494780 FOXP4Q8IVH2 680 aaPredicted RBP28.43■■■□□ 2.14
COL27A1-208ENST00000494780 WDR18Q9BV38 432 aa28.43■■■□□ 2.14
COL27A1-208ENST00000494780 PIH1D3Q9NQM4 214 aaKnown RBP28.43■■■□□ 2.14
COL27A1-208ENST00000494780 SIPA1L1O43166 1804 aa28.42■■■□□ 2.14
COL27A1-208ENST00000494780 METTL16Q86W50 562 aaKnown RBP28.42■■■□□ 2.14
COL27A1-208ENST00000494780 U2AF1L4Q8WU68 220 aaKnown RBP28.42■■■□□ 2.14
COL27A1-208ENST00000494780 CCDC8Q9H0W5 538 aaPredicted RBP28.42■■■□□ 2.14
COL27A1-208ENST00000494780 UNC93B1Q9H1C4 597 aa28.42■■■□□ 2.14
COL27A1-208ENST00000494780 ASNSP08243 561 aa28.41■■■□□ 2.14
COL27A1-208ENST00000494780 ELNP15502 786 aa28.41■■■□□ 2.14
COL27A1-208ENST00000494780 UBE2Q1Q7Z7E8 422 aa28.41■■■□□ 2.14
COL27A1-208ENST00000494780 EAF2Q96CJ1 260 aaPredicted RBP28.41■■■□□ 2.14
COL27A1-208ENST00000494780 TRIM34Q9BYJ4 488 aa28.41■■■□□ 2.14
COL27A1-208ENST00000494780 GINM1Q9NU53 330 aa28.41■■■□□ 2.14
COL27A1-208ENST00000494780 TLR7Q9NYK1 1049 aaKnown RBP28.41■■■□□ 2.14
COL27A1-208ENST00000494780 H0YGN5 161 aa28.4■■■□□ 2.14
COL27A1-208ENST00000494780 INHAP05111 366 aa28.4■■■□□ 2.14
COL27A1-208ENST00000494780 CAPN2P17655 700 aa28.4■■■□□ 2.14
COL27A1-208ENST00000494780 MIER1Q8N108 512 aa28.4■■■□□ 2.14
COL27A1-208ENST00000494780 ASCC2Q9H1I8 757 aaPredicted RBP28.4■■■□□ 2.14
COL27A1-208ENST00000494780 DNAJC18Q9H819 358 aa28.4■■■□□ 2.14
COL27A1-208ENST00000494780 FOCADQ5VW36 1801 aa28.39■■■□□ 2.14
COL27A1-208ENST00000494780 SGPL1O95470 568 aa28.39■■■□□ 2.14
COL27A1-208ENST00000494780 BACE1P56817 501 aa28.39■■■□□ 2.14
COL27A1-208ENST00000494780 CRACR2BQ8N4Y2 399 aaPredicted RBP28.39■■■□□ 2.14
COL27A1-208ENST00000494780 CDK5RAP2Q96SN8 1893 aa28.39■■■□□ 2.14
COL27A1-208ENST00000494780 PALD1Q9ULE6 856 aa28.39■■■□□ 2.14
COL27A1-208ENST00000494780 COLQQ9Y215 455 aaPredicted RBP28.39■■■□□ 2.14
COL27A1-208ENST00000494780 HLA-DOAP06340 250 aa28.38■■■□□ 2.13
COL27A1-208ENST00000494780 CYP7A1P22680 504 aa28.38■■■□□ 2.13
COL27A1-208ENST00000494780 CEP85Q6P2H3 762 aa28.38■■■□□ 2.13
COL27A1-208ENST00000494780 CERS3Q8IU89 383 aa28.38■■■□□ 2.13
COL27A1-208ENST00000494780 DPF3Q92784 378 aa28.38■■■□□ 2.13
COL27A1-208ENST00000494780 HTATIP2Q9BUP3 242 aa28.38■■■□□ 2.13
COL27A1-208ENST00000494780 TMOD4Q9NZQ9 345 aa28.38■■■□□ 2.13
COL27A1-208ENST00000494780 MYO5AQ9Y4I1 1855 aaKnown RBP28.38■■■□□ 2.13
COL27A1-208ENST00000494780 CEP290O15078 2479 aa28.37■■■□□ 2.13
COL27A1-208ENST00000494780 MTMR2Q13614 643 aa28.37■■■□□ 2.13
COL27A1-208ENST00000494780 C19orf81C9J6K1 198 aa28.36■■■□□ 2.13
COL27A1-208ENST00000494780 IDH1O75874 414 aaKnown RBP28.36■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms