RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 COA1Q9GZY4 146 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 ADARB2Q9NS39 739 aaKnown RBP8.36□□□□□ -1.07
VPS52-219ENST00000493379 ANKIB1Q9P2G1 1089 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 NDUFB9Q9Y6M9 179 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 TAF1P21675 1872 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 ZNF609O15014 1411 aa8.36□□□□□ -1.07
VPS52-219ENST00000493379 SYNGAP1Q96PV0 1343 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 POM121CA8CG34 1229 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 YDJCA8MPS7 323 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 SRGAP3O43295 1099 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 PPIP5K2O43314 1243 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 VIL1P09327 827 aaKnown RBP8.35□□□□□ -1.07
VPS52-219ENST00000493379 IL1R1P14778 569 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 IL15P40933 162 aaPredicted RBP8.35□□□□□ -1.07
VPS52-219ENST00000493379 MMP14P50281 582 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 CXCL9Q07325 125 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 AOC3Q16853 763 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 FBXO33Q7Z6M2 555 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 TXNRD3Q86VQ6 643 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 LARGE2Q8N3Y3 721 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 KLHDC4Q8TBB5 520 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 TRPM4Q8TD43 1214 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 ARMC5Q96C12 935 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 STAP2Q9UGK3 403 aa8.35□□□□□ -1.07
VPS52-219ENST00000493379 RPTORQ8N122 1335 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 POTEB3A0JP26 581 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 SHTN1A0MZ66 631 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 TNFRSF10AO00220 468 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 GPR37L1O60883 481 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 TAF5LO75529 589 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 UFL1O94874 794 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 FKBP1AP62942 108 aaKnown RBP8.34□□□□□ -1.07
VPS52-219ENST00000493379 IRF5Q13568 498 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 KMT5BQ4FZB7 885 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 TAF7LQ5H9L4 462 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 POTEBQ6S5H4 581 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 CDC37L1Q7L3B6 337 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 NIM1KQ8IY84 436 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 TDRD7Q8NHU6 1098 aaKnown RBP8.34□□□□□ -1.07
VPS52-219ENST00000493379 LRRN4Q8WUT4 740 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 TSC1Q92574 1164 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 DPF2Q92785 391 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 SYMPKQ92797 1274 aaKnown RBP8.34□□□□□ -1.07
VPS52-219ENST00000493379 FAM84BQ96KN1 310 aaPredicted RBP8.34□□□□□ -1.07
VPS52-219ENST00000493379 GMLQ99445 158 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 GPR108Q9NPR9 543 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 CNNM1Q9NRU3 951 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 GPRC5DQ9NZD1 345 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 PGAP2Q9UHJ9 254 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 CHMP3Q9Y3E7 222 aa8.34□□□□□ -1.07
VPS52-219ENST00000493379 A0A1W2PPC1 479 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 SNAP23O00161 211 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 SASH1O94885 1247 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 CAP1Q01518 475 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 TNIP1Q15025 636 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 C2orf69Q8N8R5 385 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 LPIN2Q92539 896 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 GLMNQ92990 594 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 CALR3Q96L12 384 aaKnown RBP8.33□□□□□ -1.08
VPS52-219ENST00000493379 GUCD1Q96NT3 240 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 HS3ST6Q96QI5 342 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 CD209Q9NNX6 404 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 CEP126Q9P2H0 1117 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 PA2G4Q9UQ80 394 aaKnown RBP8.33□□□□□ -1.08
VPS52-219ENST00000493379 PTPN22Q9Y2R2 807 aa8.33□□□□□ -1.08
VPS52-219ENST00000493379 ADM5C9JUS6 153 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 ACTN4O43707 911 aaKnown RBP8.32□□□□□ -1.08
VPS52-219ENST00000493379 ECE2O60344 883 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 RPS12P25398 132 aaKnown RBP8.32□□□□□ -1.08
VPS52-219ENST00000493379 KLRK1P26718 216 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 PUM3Q15397 648 aaKnown RBP8.32□□□□□ -1.08
VPS52-219ENST00000493379 SLC4A8Q2Y0W8 1093 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 METTL24Q5JXM2 366 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 MORN1Q5T089 497 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 STRIP1Q5VSL9 837 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 ADGRD1Q6QNK2 874 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 AGBL3Q8NEM8 1001 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 PRR7Q8TB68 274 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 ZNF333Q96JL9 665 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 FAM161BQ96MY7 647 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 MRIQ9BWK5 157 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 KCNQ5Q9NR82 932 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 MUC6Q6W4X9 2439 aa8.32□□□□□ -1.08
VPS52-219ENST00000493379 FAM205AQ6ZU69 1335 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 USP17L3A6NCW0 530 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 USP17L4A6NCW7 530 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 IGSF3O75054 1194 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 PDIA4P13667 645 aaKnown RBP8.31□□□□□ -1.08
VPS52-219ENST00000493379 LSM11P83369 360 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS52-219ENST00000493379 HSP90AB4PQ58FF6 505 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 DACT2Q5SW24 774 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 USP17L1Q7RTZ2 530 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 DCTPP1Q9H773 170 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 DBNDD1Q9H9R9 158 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 AKAP2Q9Y2D5 859 aa8.31□□□□□ -1.08
VPS52-219ENST00000493379 SUPT16HQ9Y5B9 1047 aaKnown RBP8.31□□□□□ -1.08
VPS52-219ENST00000493379 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.31□□□□□ -1.08
VPS52-219ENST00000493379 PDS5AQ29RF7 1337 aaKnown RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 PSMD14O00487 310 aa8.3□□□□□ -1.08
VPS52-219ENST00000493379 HRO43593 1189 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 519.7 ms