RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 GJA5P36382 358 aa19.15■□□□□ 0.66
UPF3A-208ENST00000484246 FSD1Q9BTV5 496 aa19.15■□□□□ 0.66
UPF3A-208ENST00000484246 PUS7LQ9H0K6 701 aaKnown RBP19.15■□□□□ 0.66
UPF3A-208ENST00000484246 ATP8A2Q9NTI2 1148 aa19.15■□□□□ 0.66
UPF3A-208ENST00000484246 MANSC4A6NHS7 340 aaPredicted RBP19.14■□□□□ 0.65
UPF3A-208ENST00000484246 HLA-DOAP06340 250 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 PDE4AP27815 886 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 ERO1BQ86YB8 467 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 FOXP4Q8IVH2 680 aaPredicted RBP19.14■□□□□ 0.65
UPF3A-208ENST00000484246 OSBP2Q969R2 916 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 AIDAQ96BJ3 306 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 OPTNQ96CV9 577 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 ARMT1Q9H993 441 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 ELP3Q9H9T3 547 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 DCP1AQ9NPI6 582 aaPredicted RBP19.14■□□□□ 0.65
UPF3A-208ENST00000484246 LAMB1P07942 1786 aa19.14■□□□□ 0.65
UPF3A-208ENST00000484246 CTNND1O60716 968 aaKnown RBP19.13■□□□□ 0.65
UPF3A-208ENST00000484246 TM4SF4P48230 202 aa19.13■□□□□ 0.65
UPF3A-208ENST00000484246 CACNB1Q02641 598 aaPredicted RBP19.13■□□□□ 0.65
UPF3A-208ENST00000484246 SREBF2Q12772 1141 aa19.13■□□□□ 0.65
UPF3A-208ENST00000484246 ZMYM1Q5SVZ6 1142 aa19.13■□□□□ 0.65
UPF3A-208ENST00000484246 SAMD1Q6SPF0 538 aaPredicted RBP19.13■□□□□ 0.65
UPF3A-208ENST00000484246 CENPQQ7L2Z9 268 aaPredicted RBP19.13■□□□□ 0.65
UPF3A-208ENST00000484246 SCYL3Q8IZE3 742 aa19.13■□□□□ 0.65
UPF3A-208ENST00000484246 ZKSCAN4Q969J2 545 aaPredicted RBP19.13■□□□□ 0.65
UPF3A-208ENST00000484246 STRBPQ96SI9 672 aaKnown RBP19.13■□□□□ 0.65
UPF3A-208ENST00000484246 DNAJC18Q9H819 358 aa19.13■□□□□ 0.65
UPF3A-208ENST00000484246 SAGE1Q9NXZ1 904 aa19.13■□□□□ 0.65
UPF3A-208ENST00000484246 PALD1Q9ULE6 856 aa19.13■□□□□ 0.65
UPF3A-208ENST00000484246 TESPA1A2RU30 521 aaPredicted RBP19.12■□□□□ 0.65
UPF3A-208ENST00000484246 INHBEP58166 350 aa19.12■□□□□ 0.65
UPF3A-208ENST00000484246 PPATQ06203 517 aa19.12■□□□□ 0.65
UPF3A-208ENST00000484246 PPIL2Q13356 520 aa19.12■□□□□ 0.65
UPF3A-208ENST00000484246 GIMAP6Q6P9H5 292 aa19.12■□□□□ 0.65
UPF3A-208ENST00000484246 TTC6Q86TZ1 520 aa19.12■□□□□ 0.65
UPF3A-208ENST00000484246 SDR42E1Q8WUS8 393 aa19.12■□□□□ 0.65
UPF3A-208ENST00000484246 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.12■□□□□ 0.651e-6■■■□□ 14.9
UPF3A-208ENST00000484246 SIPA1L1O43166 1804 aa19.11■□□□□ 0.65
UPF3A-208ENST00000484246 NEFLP07196 543 aa19.11■□□□□ 0.65
UPF3A-208ENST00000484246 GINM1Q9NU53 330 aa19.11■□□□□ 0.65
UPF3A-208ENST00000484246 SAP30BPQ9UHR5 308 aaKnown RBP19.11■□□□□ 0.65
UPF3A-208ENST00000484246 CDK5RAP2Q96SN8 1893 aa19.11■□□□□ 0.65
UPF3A-208ENST00000484246 MYH7P12883 1935 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 GPAA1O43292 621 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 SLURP2P0DP57 97 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 GNAT2P19087 354 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 GABPAQ06546 454 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 MS4A4AQ96JQ5 239 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 BEGAINQ9BUH8 593 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 SERPINB13Q9UIV8 391 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 KCNH4Q9UQ05 1017 aa19.1■□□□□ 0.65
UPF3A-208ENST00000484246 FAM196BA6NMK8 535 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 M0R2C6 588 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 PRKAB2O43741 272 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 ERICH6BQ5W0A0 696 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 OTUD5Q96G74 571 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 CFHR5Q9BXR6 569 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 TBC1D2Q9BYX2 928 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 PICK1Q9NRD5 415 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 MCM9Q9NXL9 1143 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 SLC4A4Q9Y6R1 1079 aa19.09■□□□□ 0.65
UPF3A-208ENST00000484246 FOXN1O15353 648 aa19.08■□□□□ 0.64
UPF3A-208ENST00000484246 PTPRAP18433 802 aa19.08■□□□□ 0.64
UPF3A-208ENST00000484246 CAP2P40123 477 aa19.08■□□□□ 0.64
UPF3A-208ENST00000484246 CTCFP49711 727 aaPredicted RBP19.08■□□□□ 0.64
UPF3A-208ENST00000484246 GTF2A2P52657 109 aa19.08■□□□□ 0.64
UPF3A-208ENST00000484246 MKRN3Q13064 507 aaKnown RBP19.08■□□□□ 0.64
UPF3A-208ENST00000484246 TATDN1Q6P1N9 297 aa19.08■□□□□ 0.64
UPF3A-208ENST00000484246 CRACR2BQ8N4Y2 399 aaPredicted RBP19.08■□□□□ 0.64
UPF3A-208ENST00000484246 DDRGK1Q96HY6 314 aa19.08■□□□□ 0.64
UPF3A-208ENST00000484246 NAV1Q8NEY1 1877 aa19.07■□□□□ 0.64
UPF3A-208ENST00000484246 GSG1L2A8MUP6 293 aa19.07■□□□□ 0.64
UPF3A-208ENST00000484246 IRF6O14896 467 aa19.07■□□□□ 0.64
UPF3A-208ENST00000484246 POLR3DP05423 398 aaPredicted RBP19.07■□□□□ 0.64
UPF3A-208ENST00000484246 PLCD1P51178 756 aa19.07■□□□□ 0.64
UPF3A-208ENST00000484246 RRP1BQ14684 758 aaKnown RBP19.07■□□□□ 0.64
UPF3A-208ENST00000484246 SBK1Q52WX2 424 aa19.07■□□□□ 0.64
UPF3A-208ENST00000484246 TTC22Q5TAA0 569 aa19.07■□□□□ 0.64
UPF3A-208ENST00000484246 ZCCHC17Q9NP64 241 aaKnown RBP19.07■□□□□ 0.64
UPF3A-208ENST00000484246 HELLSQ9NRZ9 838 aa19.07■□□□□ 0.64
UPF3A-208ENST00000484246 ARPP21Q9UBL0 812 aaPredicted RBP19.07■□□□□ 0.64
UPF3A-208ENST00000484246 CXCL11O14625 94 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 ALDH1A1P00352 501 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 ASNSP08243 561 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 HSPA8P11142 646 aaKnown RBP19.06■□□□□ 0.64
UPF3A-208ENST00000484246 GSPT1P15170 499 aaKnown RBP19.06■□□□□ 0.64
UPF3A-208ENST00000484246 SNAPC2Q13487 334 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 C12orf60Q5U649 245 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 IFNL1Q8IU54 200 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 BRI3BPQ8WY22 251 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 SEC62Q99442 399 aaKnown RBP19.06■□□□□ 0.64
UPF3A-208ENST00000484246 TRIM34Q9BYJ4 488 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 RNF186Q9NXI6 227 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 ROBO3Q96MS0 1386 aa19.06■□□□□ 0.64
UPF3A-208ENST00000484246 TRIM6-TRIM34B2RNG4 842 aa19.05■□□□□ 0.64
UPF3A-208ENST00000484246 CETPP11597 493 aa19.05■□□□□ 0.64
UPF3A-208ENST00000484246 SHMT1P34896 483 aa19.05■□□□□ 0.64
UPF3A-208ENST00000484246 NOM1Q5C9Z4 860 aaKnown RBP19.05■□□□□ 0.64
UPF3A-208ENST00000484246 AMOTL1Q8IY63 956 aa19.05■□□□□ 0.64
UPF3A-208ENST00000484246 EPB41L4AQ9HCS5 686 aaPredicted RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms