RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 LNPKQ9C0E8 428 aa7.91□□□□□ -1.14
UPF3A-205ENST00000479712 STARD13Q9Y3M8 1113 aa7.91□□□□□ -1.14
UPF3A-205ENST00000479712 LRRC9Q6ZRR7 1453 aa7.91□□□□□ -1.14
UPF3A-205ENST00000479712 ZNF518AQ6AHZ1 1483 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 EPXP11678 715 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 ARNTP27540 789 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 CRKP46108 304 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 SOX9P48436 509 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 RBL2Q08999 1139 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 SEPT6Q14141 434 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 GRIK5Q16478 980 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 DIEXFQ68CQ4 756 aaKnown RBP7.9□□□□□ -1.14
UPF3A-205ENST00000479712 CCDC84Q86UT8 332 aaPredicted RBP7.9□□□□□ -1.14
UPF3A-205ENST00000479712 IL22RA1Q8N6P7 574 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 PMFBP1Q8TBY8 1022 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 STK35Q8TDR2 534 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 JARID2Q92833 1246 aaPredicted RBP7.9□□□□□ -1.14
UPF3A-205ENST00000479712 NKD1Q969G9 470 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 STRIP2Q9ULQ0 834 aa7.9□□□□□ -1.14
UPF3A-205ENST00000479712 ZC3H13Q5T200 1668 aaKnown RBP7.89□□□□□ -1.15
UPF3A-205ENST00000479712 MAP3K1Q13233 1512 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 SCAF11Q99590 1463 aaKnown RBP7.89□□□□□ -1.15
UPF3A-205ENST00000479712 RTEL1-TNFRSF6BF6WH68 1400 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 KIF27Q86VH2 1401 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 ROBO2Q9HCK4 1378 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 SOX1O00570 391 aaPredicted RBP7.89□□□□□ -1.15
UPF3A-205ENST00000479712 TLR3O15455 904 aaKnown RBP7.89□□□□□ -1.15
UPF3A-205ENST00000479712 F13A1P00488 732 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 ALBP02768 609 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 AP3B2Q13367 1082 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 KANK3Q6NY19 840 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 GATAD2BQ8WXI9 593 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 SLC7A3Q8WY07 619 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 PPME1Q9Y570 386 aa7.89□□□□□ -1.15
UPF3A-205ENST00000479712 GSK3AP49840 483 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 GSTM4Q03013 218 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 KCNMA1Q12791 1236 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 SEZ6Q53EL9 994 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 SOGA3Q5TF21 947 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 FAM117BQ6P1L5 589 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 TXNDC11Q6PKC3 985 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 C20orf204Q6ZNR8 217 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 SLITRK4Q8IW52 837 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 FBXO27Q8NI29 283 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 GRIN3AQ8TCU5 1115 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 CPLX3Q8WVH0 158 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 ACDQ96AP0 544 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 LRRC3Q9BY71 257 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 SOX17Q9H6I2 414 aaPredicted RBP7.88□□□□□ -1.15
UPF3A-205ENST00000479712 KDM5DQ9BY66 1539 aa7.88□□□□□ -1.15
UPF3A-205ENST00000479712 LINC01387J3KSC0 135 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 M0R082 166 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 LILRB5O75023 590 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 ADAMTS2O95450 1211 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 BPNT1O95861 308 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 BAG6P46379 1132 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 ARL4DP49703 201 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 AFF1P51825 1210 aaKnown RBP7.87□□□□□ -1.15
UPF3A-205ENST00000479712 ZNF252P-AS1Q0IIN9 211 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 MPP2Q14168 576 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 CWF19L2Q2TBE0 894 aaKnown RBP7.87□□□□□ -1.15
UPF3A-205ENST00000479712 C1orf229Q6ZS94 237 aaPredicted RBP7.87□□□□□ -1.15
UPF3A-205ENST00000479712 ZNF417Q8TAU3 575 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 GAL3ST3Q96A11 431 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 ZNF587Q96SQ5 575 aaPredicted RBP7.87□□□□□ -1.15
UPF3A-205ENST00000479712 ZNF408Q9H9D4 720 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 GOLGA3Q08378 1498 aa7.87□□□□□ -1.15
UPF3A-205ENST00000479712 FAM221AA4D161 298 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 CILPO75339 1184 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 GSTP1P09211 210 aaKnown RBP7.86□□□□□ -1.15
UPF3A-205ENST00000479712 KRT76Q01546 638 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 C19orf57Q0VDD7 668 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 CCDC144BQ3MJ40 725 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 MAP1SQ66K74 1059 aaPredicted RBP7.86□□□□□ -1.15
UPF3A-205ENST00000479712 HGSNATQ68CP4 663 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 SCARA3Q6AZY7 606 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 CHSY3Q70JA7 882 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 PDZD3Q86UT5 571 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 WFDC8Q8IUA0 241 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 CKAP2LQ8IYA6 745 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 EDARADDQ8WWZ3 215 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 WNT8BQ93098 351 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 MRVI1Q9Y6F6 885 aa7.86□□□□□ -1.15
UPF3A-205ENST00000479712 TNRQ92752 1358 aa7.85□□□□□ -1.15
UPF3A-205ENST00000479712 DIP2AQ14689 1571 aa7.85□□□□□ -1.15
UPF3A-205ENST00000479712 EIF4EBP3O60516 100 aaPredicted RBP7.85□□□□□ -1.15
UPF3A-205ENST00000479712 TRIM37O94972 964 aa7.85□□□□□ -1.15
UPF3A-205ENST00000479712 MCM4P33991 863 aa7.85□□□□□ -1.15
UPF3A-205ENST00000479712 C8orf86Q6ZUL3 223 aa7.85□□□□□ -1.15
UPF3A-205ENST00000479712 GALNT6Q8NCL4 622 aa7.85□□□□□ -1.15
UPF3A-205ENST00000479712 KCNB2Q92953 911 aa7.85□□□□□ -1.15
UPF3A-205ENST00000479712 CORO1BQ9BR76 489 aa7.85□□□□□ -1.15
UPF3A-205ENST00000479712 SRRTQ9BXP5 876 aaKnown RBP7.85□□□□□ -1.15
UPF3A-205ENST00000479712 UGGT1Q9NYU2 1555 aa7.84□□□□□ -1.15
UPF3A-205ENST00000479712 FSCN2O14926 492 aa7.84□□□□□ -1.15
UPF3A-205ENST00000479712 SMARCA5O60264 1052 aaPredicted RBP7.84□□□□□ -1.15
UPF3A-205ENST00000479712 CYP11A1P05108 521 aa7.84□□□□□ -1.15
UPF3A-205ENST00000479712 ETFBP38117 255 aa7.84□□□□□ -1.15
UPF3A-205ENST00000479712 MSL1Q68DK7 614 aa7.84□□□□□ -1.15
UPF3A-205ENST00000479712 CCDC81Q6ZN84 652 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms