RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 APBA1Q02410 837 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 SAMD1Q6SPF0 538 aaPredicted RBP6.12□□□□□ -1.43
SYNE1-220ENST00000471834 P3H4Q92791 437 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 TTF2Q9UNY4 1162 aaKnown RBP6.12□□□□□ -1.43
SYNE1-220ENST00000471834 PNPLA7Q6ZV29 1317 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 MYH15Q9Y2K3 1946 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 RBAK-RBAKDNI3L0D1 243 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 MYL1P05976 194 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 SPDYCQ5MJ68 293 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 PSMD1Q99460 953 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 PRDM10Q9NQV6 1147 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 LCMT1Q9UIC8 334 aa6.12□□□□□ -1.43
SYNE1-220ENST00000471834 FBXO2Q9UK22 296 aaPredicted RBP6.12□□□□□ -1.43
SYNE1-220ENST00000471834 MAP4K4O95819 1239 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 KCNH5Q8NCM2 988 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 KAT2BQ92831 832 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 ISCA1Q9BUE6 129 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 MRPL44Q9H9J2 332 aaKnown RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 ARFGAP3Q9NP61 516 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 RRP15Q9Y3B9 282 aaKnown RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 UBN2Q6ZU65 1347 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 EXOC5O00471 708 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 RNMTO43148 476 aaKnown RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 MFAP3LO75121 409 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 APPP05067 770 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 DRP2Q13474 957 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 GPR162Q16538 588 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 WASHC4Q2M389 1173 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 ZNF568Q3ZCX4 644 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 DPY19L2P1Q6NXN4 242 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 CKAP2LQ8IYA6 745 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 PNKPQ96T60 521 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 MOV10L1Q9BXT6 1211 aaKnown RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 GBP3Q9H0R5 595 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 RNF216Q9NWF9 866 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 PPFIA3O75145 1194 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 PPM1FP49593 454 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 CCDC73Q6ZRK6 1079 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 OLIG1Q8TAK6 271 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 STRN4Q9NRL3 753 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 SYT10Q6XYQ8 523 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 PRPF38AQ8NAV1 312 aaKnown RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 CTCFLQ8NI51 663 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 LAMB4A4D0S4 1761 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 SPAG1Q07617 926 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 GBP6Q6ZN66 633 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 ZC3H3Q8IXZ2 948 aaKnown RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 ST7Q9NRC1 585 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 AATFQ9NY61 560 aaKnown RBP eCLIP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 TLR7Q9NYK1 1049 aaKnown RBP6.11□□□□□ -1.43
SYNE1-220ENST00000471834 JRKLQ9Y4A0 524 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 NUP188Q5SRE5 1749 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 NECAB1Q8N987 351 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 FAM107BQ9H098 131 aa6.11□□□□□ -1.43
SYNE1-220ENST00000471834 KIF28PB7ZC32 967 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 ZNF202O95125 648 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 NDUFA8P51970 172 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 SETQ01105 290 aaPredicted RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 LACTB2Q53H82 288 aaPredicted RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 LRRC31Q6UY01 552 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 SHISA4Q96DD7 197 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 TMEM109Q9BVC6 243 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 DONSONQ9NYP3 566 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 MTMR7Q9Y216 660 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 KIF1CO43896 1103 aaKnown RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 IL15P40933 162 aaPredicted RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 NFXL1Q6ZNB6 911 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 CCDC134Q9H6E4 229 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 RNF14Q9UBS8 474 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 ANAPC4Q9UJX5 808 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 E7EWF7 191 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 CES2O00748 559 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 KINO60870 393 aaKnown RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 EIF5P55010 431 aaKnown RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 FERMT3Q86UX7 667 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 TMTC1Q8IUR5 882 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 RETREG2Q8NC44 543 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 FGFR2P21802 821 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 AKAP17AQ02040 695 aaKnown RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 TRIM14Q14142 442 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 FOXP1Q9H334 677 aaPredicted RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 KIF1AQ12756 1690 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 CCNG1P51959 295 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 KIF4BQ2VIQ3 1234 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 RILPL1Q5EBL4 403 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 SYNE3Q6ZMZ3 975 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 CEP112Q8N8E3 955 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 C9orf78Q9NZ63 289 aaPredicted RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 RSPH14Q9UHP6 348 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 OAS2P29728 719 aaKnown RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 POU5F1Q01860 360 aaKnown RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 PPP2R3AQ06190 1150 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 PDE4BQ07343 736 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 AIMP1Q12904 312 aaKnown RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 SKIDA1Q1XH10 827 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 SPATA1Q5VX52 437 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 EMBQ6PCB8 327 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 CWC27Q6UX04 472 aaKnown RBP6.1□□□□□ -1.43
SYNE1-220ENST00000471834 TADA2BQ86TJ2 420 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 CCDC155Q8N6L0 562 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms