RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	SBK1	Q52WX2	424 aa		12.82	□□□□□ -0.36
UBR4-208	ENST00000459947	SCYL3	Q8IZE3	742 aa		12.82	□□□□□ -0.36
UBR4-208	ENST00000459947	DDX60L	Q5H9U9	1706 aa	Known RBP	12.82	□□□□□ -0.36
UBR4-208	ENST00000459947	EIF5B	O60841	1220 aa	Known RBP	12.82	□□□□□ -0.36
UBR4-208	ENST00000459947	FMR1	Q06787	632 aa	Known RBP eCLIP	12.82	□□□□□ -0.36	8e-8	■□□□□ 8.8
UBR4-208	ENST00000459947	SAGE1	Q9NXZ1	904 aa		12.82	□□□□□ -0.36
UBR4-208	ENST00000459947	ZMYM6	O95789	1325 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	PRAMEF18	Q5VWM3	479 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	SPRYD7	Q5W111	196 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	LCORL	Q8N3X6	602 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	STRBP	Q96SI9	672 aa	Known RBP	12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	ARMT1	Q9H993	441 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	SERPINB13	Q9UIV8	391 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	GTF2A2	P52657	109 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	DOCK1	Q14185	1865 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	MCMDC2	Q4G0Z9	681 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	RILPL2	Q969X0	211 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	CCDC17	Q96LX7	622 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	GPAA1	O43292	621 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	TSHZ3	Q63HK5	1081 aa		12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	DCP1A	Q9NPI6	582 aa	Predicted RBP	12.81	□□□□□ -0.36
UBR4-208	ENST00000459947	CXCL11	O14625	94 aa		12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	CYP4F22	Q6NT55	531 aa		12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	MCM9	Q9NXL9	1143 aa		12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	OTOF	Q9HC10	1997 aa		12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	DDTL	A6NHG4	134 aa	Predicted RBP	12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	PATL2	C9JE40	543 aa	Known RBP	12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	ASNS	P08243	561 aa		12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	ALX1	Q15699	326 aa		12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	CASC1	Q6TDU7	716 aa		12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	CABP5	Q9NP86	173 aa		12.8	□□□□□ -0.36
UBR4-208	ENST00000459947	PRKG1	Q13976	671 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	SH3BP5L	Q7L8J4	393 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	CETP	P11597	493 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	SDS	P20132	328 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	SNAPC2	Q13487	334 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	VGLL4	Q14135	290 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	FAM155A	B1AL88	458 aa	Predicted RBP	12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	PC	P11498	1178 aa	Known RBP	12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	PDE4A	P27815	886 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	TDO2	P48775	406 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	OSBP2	Q969R2	916 aa		12.79	□□□□□ -0.36
UBR4-208	ENST00000459947	PUS7L	Q9H0K6	701 aa	Known RBP	12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	ELP3	Q9H9T3	547 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	SNCAIP	Q9Y6H5	919 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	CCDC171	Q6TFL3	1326 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	ROBO3	Q96MS0	1386 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	NAPB	Q9H115	298 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	TM4SF4	P48230	202 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	PABPC4	Q13310	644 aa	Known RBP eCLIP	12.78	□□□□□ -0.36	1e-13	■■■□□ 18.5
UBR4-208	ENST00000459947	BMP2KL	Q5H9B9	411 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	FASTKD5	Q7L8L6	764 aa	Known RBP	12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	ZFPM1	Q8IX07	1006 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	SH2D4A	Q9H788	454 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	CTNNA3	Q9UI47	895 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	SCAF8	Q9UPN6	1271 aa	Known RBP	12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	KCNH4	Q9UQ05	1017 aa		12.78	□□□□□ -0.36
UBR4-208	ENST00000459947	TESPA1	A2RU30	521 aa	Predicted RBP	12.77	□□□□□ -0.36
UBR4-208	ENST00000459947	CAP2	P40123	477 aa		12.77	□□□□□ -0.36
UBR4-208	ENST00000459947	KIF23	Q02241	960 aa	Predicted RBP	12.77	□□□□□ -0.36
UBR4-208	ENST00000459947	C12orf60	Q5U649	245 aa		12.77	□□□□□ -0.36
UBR4-208	ENST00000459947	OPTN	Q96CV9	577 aa		12.77	□□□□□ -0.36
UBR4-208	ENST00000459947	SAP30BP	Q9UHR5	308 aa	Known RBP	12.77	□□□□□ -0.36
UBR4-208	ENST00000459947	USP17L5	A8MUK1	530 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	APP	P05067	770 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	MIGA2	Q7L4E1	593 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	PHF20L1	A8MW92	1017 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	NOM1	Q5C9Z4	860 aa	Known RBP	12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	TATDN1	Q6P1N9	297 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	DLK2	Q6UY11	383 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	MOB2	Q70IA6	237 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	WDR18	Q9BV38	432 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	CFHR5	Q9BXR6	569 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	PALD1	Q9ULE6	856 aa		12.77	□□□□□ -0.37
UBR4-208	ENST00000459947	CTCF	P49711	727 aa	Predicted RBP	12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	PDE4B	Q07343	736 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	SLC45A1	Q9Y2W3	748 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947		M0R2C6	588 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	NMI	Q13287	307 aa	Predicted RBP	12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	GSG1L2	A8MUP6	293 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	C19orf81	C9J6K1	198 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	GABPA	Q06546	454 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	CERKL	Q49MI3	558 aa	Predicted RBP	12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	C16orf86	Q6ZW13	317 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	IFNL3	Q8IZI9	196 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	SDR42E1	Q8WUS8	393 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	WBP1L	Q9NX94	342 aa		12.76	□□□□□ -0.37
UBR4-208	ENST00000459947	SIPA1L1	O43166	1804 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	USP14	P54578	494 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	HTRA3	P83110	453 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	DSCC1	Q9BVC3	393 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	INPP5B	P32019	993 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	GRM1	Q13255	1194 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	TMEM179	Q6ZVK1	233 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	CDAN1	Q8IWY9	1227 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	RNF41	Q9H4P4	317 aa	Predicted RBP	12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	SYNPO2	Q9UMS6	1093 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	ATAD5	Q96QE3	1844 aa		12.75	□□□□□ -0.37
UBR4-208	ENST00000459947	USP17L12	C9JPN9	530 aa		12.75	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms