RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 DAAM1Q9Y4D1 1078 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 TTC41PQ6P2S7 1318 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 MIS18AQ9NYP9 233 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 CUL3Q13618 768 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 SEPT2Q15019 361 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 NBPF10Q6P3W6 841 aaKnown RBP14.82□□□□□ -0.04
USP40-208ENST00000450966 FBXO38Q6PIJ6 1188 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 CLSTN2Q9H4D0 955 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 BICC1Q9H694 974 aaKnown RBP14.82□□□□□ -0.04
USP40-208ENST00000450966 DDX21Q9NR30 783 aaKnown RBP eCLIP14.82□□□□□ -0.04
USP40-208ENST00000450966 BTG4Q9NY30 223 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 MAP3K2Q9Y2U5 619 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 ERBB4Q15303 1308 aa14.82□□□□□ -0.04
USP40-208ENST00000450966 TRPC3Q13507 836 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 NUF2Q9BZD4 464 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 SCINQ9Y6U3 715 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 TPD52P55327 224 aaPredicted RBP14.81□□□□□ -0.04
USP40-208ENST00000450966 NBPF20Q3BBV1 942 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 TTC19Q6DKK2 380 aaPredicted RBP14.81□□□□□ -0.04
USP40-208ENST00000450966 CCDC42Q96M95 316 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 YEATS2Q9ULM3 1422 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 GPTP24298 496 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 PDE6BP35913 854 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 PCYT1AP49585 367 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 ADAM21Q9UKJ8 722 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 PYCARDQ9ULZ3 195 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 TNNI2P48788 182 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 ATL3Q6DD88 541 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 FBXO41Q8TF61 875 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 ARHGAP45Q92619 1136 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 GFM2Q969S9 779 aaKnown RBP14.81□□□□□ -0.04
USP40-208ENST00000450966 KLHL14Q9P2G3 628 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 DNMT1P26358 1616 aaKnown RBP14.81□□□□□ -0.04
USP40-208ENST00000450966 USP21Q9UK80 565 aa14.81□□□□□ -0.04
USP40-208ENST00000450966 PPP1R21Q6ZMI0 780 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 RANBP6O60518 1105 aaKnown RBP14.8□□□□□ -0.04
USP40-208ENST00000450966 HNRNPCP07910 306 aaKnown RBP eCLIP14.8□□□□□ -0.04
USP40-208ENST00000450966 NAA16Q6N069 864 aaPredicted RBP14.8□□□□□ -0.04
USP40-208ENST00000450966 BOLA2Q9H3K6 86 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 ATP2A1O14983 1001 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 EVI5O60447 810 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 MUM1L1Q5H9M0 696 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 WDR78Q5VTH9 848 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 BCAP29Q9UHQ4 241 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 GRAMD4Q6IC98 578 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 LRRC8AQ8IWT6 810 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 CTTNBP2NLQ9P2B4 639 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 USP16Q9Y5T5 823 aa14.8□□□□□ -0.04
USP40-208ENST00000450966 MAP3K5Q99683 1374 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 RASSF10A6NK89 507 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 ACBD5Q5T8D3 534 aaPredicted RBP14.79□□□□□ -0.04
USP40-208ENST00000450966 CCDC197Q8NCU1 140 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 SPTLC3Q9NUV7 552 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 FAM169AQ9Y6X4 670 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 EDC4Q6P2E9 1401 aaKnown RBP14.79□□□□□ -0.04
USP40-208ENST00000450966 MACROD2A1Z1Q3 448 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 ZNF213O14771 459 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 SEC31AO94979 1220 aaKnown RBP14.79□□□□□ -0.04
USP40-208ENST00000450966 PRR16Q569H4 304 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 DZIP3Q86Y13 1208 aaKnown RBP14.79□□□□□ -0.04
USP40-208ENST00000450966 ACSBG1Q96GR2 724 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 SLC12A7Q9Y666 1083 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.79□□□□□ -0.04
USP40-208ENST00000450966 NLRP1Q9C000 1473 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 KDM2BQ8NHM5 1336 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 NIP7Q9Y221 180 aaKnown RBP eCLIP14.79□□□□□ -0.04
USP40-208ENST00000450966 PHLPP2Q6ZVD8 1323 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 CYP26C1Q6V0L0 522 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 LRRC43Q8N309 656 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 CLEC11AQ9Y240 323 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 JAKMIP2Q96AA8 810 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 HMG20BQ9P0W2 317 aa14.79□□□□□ -0.04
USP40-208ENST00000450966 SPECC1L-ADORA2AF8WAN1 911 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 CDC25BP30305 580 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 TCP11Q8WWU5 503 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 CCDC87Q9NVE4 849 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 RNF123Q5XPI4 1314 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 CCDC194A0A1B0GVG4 234 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 GNPTABQ3T906 1256 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.78□□□□□ -0.04
USP40-208ENST00000450966 GUCY1B3Q02153 619 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 CRYMQ14894 314 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 EVI5LQ96CN4 794 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 ZC3H12CQ9C0D7 883 aaKnown RBP14.78□□□□□ -0.04
USP40-208ENST00000450966 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.78□□□□□ -0.04
USP40-208ENST00000450966 SBNO1A3KN83 1393 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 FCHSD1Q86WN1 690 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 CCDC68Q9H2F9 335 aa14.78□□□□□ -0.04
USP40-208ENST00000450966 ARHGEF5Q12774 1597 aa14.77□□□□□ -0.04
USP40-208ENST00000450966 CATIPQ7Z7H3 387 aa14.77□□□□□ -0.04
USP40-208ENST00000450966 NME8Q8N427 588 aa14.77□□□□□ -0.04
USP40-208ENST00000450966 CCNL1Q9UK58 526 aaPredicted RBP14.77□□□□□ -0.04
USP40-208ENST00000450966 APBB1IPQ7Z5R6 666 aaPredicted RBP14.77□□□□□ -0.04
USP40-208ENST00000450966 TMTC1Q8IUR5 882 aa14.77□□□□□ -0.04
USP40-208ENST00000450966 TRPC5Q9UL62 973 aaPredicted RBP14.77□□□□□ -0.04
USP40-208ENST00000450966 TARBP1Q13395 1621 aaKnown RBP14.77□□□□□ -0.04
USP40-208ENST00000450966 VPS41P49754 854 aa14.77□□□□□ -0.05
USP40-208ENST00000450966 THUMPD2Q9BTF0 503 aaKnown RBP14.77□□□□□ -0.05
USP40-208ENST00000450966 NPHP4O75161 1426 aaPredicted RBP14.77□□□□□ -0.05
USP40-208ENST00000450966 FANCCQ00597 558 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms