RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 ZNF589Q86UQ0 364 aaPredicted RBP20.63■□□□□ 0.89
LIME1-202ENST00000444951 IFNL1Q8IU54 200 aa20.63■□□□□ 0.89
LIME1-202ENST00000444951 TMEM39BQ9GZU3 492 aa20.63■□□□□ 0.89
LIME1-202ENST00000444951 IL25Q9H293 177 aa20.63■□□□□ 0.89
LIME1-202ENST00000444951 TMOD2Q9NZR1 351 aa20.63■□□□□ 0.89
LIME1-202ENST00000444951 PDE4DIPQ5VU43 2346 aa20.62■□□□□ 0.89
LIME1-202ENST00000444951 PRKAB2O43741 272 aa20.62■□□□□ 0.89
LIME1-202ENST00000444951 APPP05067 770 aa20.62■□□□□ 0.89
LIME1-202ENST00000444951 ZBTB48P10074 688 aaPredicted RBP20.62■□□□□ 0.89
LIME1-202ENST00000444951 RHBDL3P58872 404 aa20.62■□□□□ 0.89
LIME1-202ENST00000444951 PICALMQ13492 652 aa20.62■□□□□ 0.89
LIME1-202ENST00000444951 TGFBRAP1Q8WUH2 860 aa20.62■□□□□ 0.89
LIME1-202ENST00000444951 STRBPQ96SI9 672 aaKnown RBP20.62■□□□□ 0.89
LIME1-202ENST00000444951 ESYT1Q9BSJ8 1104 aa20.62■□□□□ 0.89
LIME1-202ENST00000444951 CRNKL1Q9BZJ0 848 aaKnown RBP20.62■□□□□ 0.89
LIME1-202ENST00000444951 SLC4A4Q9Y6R1 1079 aa20.62■□□□□ 0.89
LIME1-202ENST00000444951 CCDC171Q6TFL3 1326 aa20.61■□□□□ 0.89
LIME1-202ENST00000444951 FKTNO75072 461 aa20.61■□□□□ 0.89
LIME1-202ENST00000444951 USP5P45974 858 aa20.61■□□□□ 0.89
LIME1-202ENST00000444951 IREB2P48200 963 aaKnown RBP20.61■□□□□ 0.89
LIME1-202ENST00000444951 SDR42E1Q8WUS8 393 aa20.61■□□□□ 0.89
LIME1-202ENST00000444951 CNKSR2Q8WXI2 1034 aa20.61■□□□□ 0.89
LIME1-202ENST00000444951 CENPFP49454 3210 aa20.61■□□□□ 0.89
LIME1-202ENST00000444951 SGSM2O43147 1006 aa20.6■□□□□ 0.89
LIME1-202ENST00000444951 MFAP1P55081 439 aaKnown RBP20.6■□□□□ 0.89
LIME1-202ENST00000444951 MAPKAPK5Q8IW41 473 aa20.6■□□□□ 0.89
LIME1-202ENST00000444951 PTPN18Q99952 460 aa20.6■□□□□ 0.89
LIME1-202ENST00000444951 ELP3Q9H9T3 547 aa20.6■□□□□ 0.89
LIME1-202ENST00000444951 RAD50Q92878 1312 aa20.59■□□□□ 0.89
LIME1-202ENST00000444951 TCP10Q12799 353 aa20.59■□□□□ 0.89
LIME1-202ENST00000444951 NFIAQ12857 509 aa20.59■□□□□ 0.89
LIME1-202ENST00000444951 TNFAIP1Q13829 316 aa20.59■□□□□ 0.89
LIME1-202ENST00000444951 PKN2Q16513 984 aaKnown RBP20.59■□□□□ 0.89
LIME1-202ENST00000444951 VPS53Q5VIR6 699 aa20.59■□□□□ 0.89
LIME1-202ENST00000444951 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.59■□□□□ 0.89
LIME1-202ENST00000444951 CERS3Q8IU89 383 aa20.59■□□□□ 0.89
LIME1-202ENST00000444951 ANKRD13AQ8IZ07 590 aa20.59■□□□□ 0.89
LIME1-202ENST00000444951 UNCXA6NJT0 531 aa20.58■□□□□ 0.89
LIME1-202ENST00000444951 WDHD1O75717 1129 aaPredicted RBP20.58■□□□□ 0.89
LIME1-202ENST00000444951 INHBEP58166 350 aa20.58■□□□□ 0.89
LIME1-202ENST00000444951 SLC4A8Q2Y0W8 1093 aa20.58■□□□□ 0.89
LIME1-202ENST00000444951 OPTNQ96CV9 577 aa20.58■□□□□ 0.89
LIME1-202ENST00000444951 DDX4Q9NQI0 724 aaKnown RBP20.58■□□□□ 0.89
LIME1-202ENST00000444951 SAP30BPQ9UHR5 308 aaKnown RBP20.58■□□□□ 0.89
LIME1-202ENST00000444951 ALDH1A1P00352 501 aa20.57■□□□□ 0.88
LIME1-202ENST00000444951 GNAT2P19087 354 aa20.57■□□□□ 0.88
LIME1-202ENST00000444951 CAP1Q01518 475 aa20.57■□□□□ 0.88
LIME1-202ENST00000444951 VGLL4Q14135 290 aa20.57■□□□□ 0.88
LIME1-202ENST00000444951 FBXO46Q6PJ61 603 aaPredicted RBP20.57■□□□□ 0.88
LIME1-202ENST00000444951 KIAA1211Q6ZU35 1233 aa20.57■□□□□ 0.88
LIME1-202ENST00000444951 ANO2Q9NQ90 1003 aa20.57■□□□□ 0.88
LIME1-202ENST00000444951 TESPA1A2RU30 521 aaPredicted RBP20.56■□□□□ 0.88
LIME1-202ENST00000444951 PATL2C9JE40 543 aaKnown RBP20.56■□□□□ 0.88
LIME1-202ENST00000444951 CRHR2Q13324 411 aa20.56■□□□□ 0.88
LIME1-202ENST00000444951 ZFPM1Q8IX07 1006 aa20.56■□□□□ 0.88
LIME1-202ENST00000444951 FAM198AQ9UFP1 575 aa20.56■□□□□ 0.88
LIME1-202ENST00000444951 FLT1P17948 1338 aa20.55■□□□□ 0.88
LIME1-202ENST00000444951 GSG1L2A8MUP6 293 aa20.55■□□□□ 0.88
LIME1-202ENST00000444951 HSPD1P10809 573 aaKnown RBP20.55■□□□□ 0.88
LIME1-202ENST00000444951 TDO2P48775 406 aa20.55■□□□□ 0.88
LIME1-202ENST00000444951 PTH1RQ03431 593 aa20.55■□□□□ 0.88
LIME1-202ENST00000444951 C8orf34Q49A92 452 aa20.55■□□□□ 0.88
LIME1-202ENST00000444951 ZSCAN29Q8IWY8 852 aaPredicted RBP20.55■□□□□ 0.88
LIME1-202ENST00000444951 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.55■□□□□ 0.88
LIME1-202ENST00000444951 DDRGK1Q96HY6 314 aa20.55■□□□□ 0.88
LIME1-202ENST00000444951 MS4A4AQ96JQ5 239 aa20.55■□□□□ 0.88
LIME1-202ENST00000444951 MKI67P46013 3256 aaKnown RBP20.54■□□□□ 0.88
LIME1-202ENST00000444951 CDK5RAP2Q96SN8 1893 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 BRCA2P51587 3418 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 TNNI2P48788 182 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 OTOP1Q7RTM1 612 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 IFNL3Q8IZI9 196 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 BRI3BPQ8WY22 251 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 IDI2Q9BXS1 227 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 NACAP1Q9BZK3 213 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 EPB41L4AQ9HCS5 686 aaPredicted RBP20.54■□□□□ 0.88
LIME1-202ENST00000444951 DCP1AQ9NPI6 582 aaPredicted RBP20.54■□□□□ 0.88
LIME1-202ENST00000444951 ATP8A2Q9NTI2 1148 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 MCM9Q9NXL9 1143 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 TRIM17Q9Y577 477 aa20.54■□□□□ 0.88
LIME1-202ENST00000444951 FOXP2O15409 715 aa20.53■□□□□ 0.88
LIME1-202ENST00000444951 MAP3K9P80192 1104 aa20.53■□□□□ 0.88
LIME1-202ENST00000444951 CD99L2Q8TCZ2 262 aa20.53■□□□□ 0.88
LIME1-202ENST00000444951 OSBPL5Q9H0X9 879 aaPredicted RBP20.53■□□□□ 0.88
LIME1-202ENST00000444951 NAPBQ9H115 298 aa20.53■□□□□ 0.88
LIME1-202ENST00000444951 PALD1Q9ULE6 856 aa20.53■□□□□ 0.88
LIME1-202ENST00000444951 NAV1Q8NEY1 1877 aa20.52■□□□□ 0.88
LIME1-202ENST00000444951 CYP2D7A0A087X1C5 515 aa20.52■□□□□ 0.88
LIME1-202ENST00000444951 POLR3DP05423 398 aaPredicted RBP20.52■□□□□ 0.88
LIME1-202ENST00000444951 CYP2D6P10635 497 aa20.52■□□□□ 0.88
LIME1-202ENST00000444951 SNCAIPQ9Y6H5 919 aa20.52■□□□□ 0.88
LIME1-202ENST00000444951 FOCADQ5VW36 1801 aa20.51■□□□□ 0.87
LIME1-202ENST00000444951 MINDY4BA8MYZ0 360 aa20.51■□□□□ 0.87
LIME1-202ENST00000444951 ENTPD3O75355 529 aa20.51■□□□□ 0.87
LIME1-202ENST00000444951 REC8O95072 547 aa20.51■□□□□ 0.87
LIME1-202ENST00000444951 SEC24BO95487 1268 aa20.51■□□□□ 0.87
LIME1-202ENST00000444951 FKBP1CQ5VVH2 108 aa20.51■□□□□ 0.87
LIME1-202ENST00000444951 STK11IPQ8N1F8 1099 aa20.51■□□□□ 0.87
LIME1-202ENST00000444951 FAM151AQ8WW52 585 aa20.51■□□□□ 0.87
LIME1-202ENST00000444951 OTUD5Q96G74 571 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms