RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 FLT3LGP49771 235 aa35.04■■■■□ 3.2
HMGB1-205ENST00000399494 ITPRIPQ8IWB1 547 aa35.04■■■■□ 3.2
HMGB1-205ENST00000399494 OSBPL5Q9H0X9 879 aaPredicted RBP35.04■■■■□ 3.2
HMGB1-205ENST00000399494 RAI14Q9P0K7 980 aa35.04■■■■□ 3.2
HMGB1-205ENST00000399494 ADCY3O60266 1144 aa35.03■■■■□ 3.2
HMGB1-205ENST00000399494 MS4A1P11836 297 aa35.03■■■■□ 3.2
HMGB1-205ENST00000399494 MCAMP43121 646 aa35.03■■■■□ 3.2
HMGB1-205ENST00000399494 SMCR8Q8TEV9 937 aaPredicted RBP35.03■■■■□ 3.2
HMGB1-205ENST00000399494 TREML2Q5T2D2 321 aa35.02■■■■□ 3.2
HMGB1-205ENST00000399494 RLBP1P12271 317 aa35.01■■■■□ 3.2
HMGB1-205ENST00000399494 DPF3Q92784 378 aa35.01■■■■□ 3.2
HMGB1-205ENST00000399494 UNC93B1Q9H1C4 597 aa35.01■■■■□ 3.2
HMGB1-205ENST00000399494 UQCRFS1P1P0C7P4 283 aa35■■■■□ 3.19
HMGB1-205ENST00000399494 SPP2Q13103 211 aa35■■■■□ 3.19
HMGB1-205ENST00000399494 RRP1BQ14684 758 aaKnown RBP35■■■■□ 3.19
HMGB1-205ENST00000399494 PXYLP1Q8TE99 480 aa35■■■■□ 3.19
HMGB1-205ENST00000399494 U2AF1L4Q8WU68 220 aaKnown RBP35■■■■□ 3.19
HMGB1-205ENST00000399494 LRP2BPQ9P2M1 347 aa35■■■■□ 3.19
HMGB1-205ENST00000399494 COL2A1P02458 1487 aaPredicted RBP35■■■■□ 3.19
HMGB1-205ENST00000399494 TNPO2O14787 897 aaKnown RBP34.99■■■■□ 3.19
HMGB1-205ENST00000399494 IRF5Q13568 498 aa34.99■■■■□ 3.19
HMGB1-205ENST00000399494 ANKRD13CQ8N6S4 541 aa34.99■■■■□ 3.19
HMGB1-205ENST00000399494 PROCA1Q8NCQ7 364 aaPredicted RBP34.99■■■■□ 3.19
HMGB1-205ENST00000399494 ELNP15502 786 aa34.98■■■■□ 3.19
HMGB1-205ENST00000399494 CAP2P40123 477 aa34.98■■■■□ 3.19
HMGB1-205ENST00000399494 TEX11Q8IYF3 940 aa34.98■■■■□ 3.19
HMGB1-205ENST00000399494 ZNF280CQ8ND82 737 aa34.98■■■■□ 3.19
HMGB1-205ENST00000399494 PANK1Q8TE04 598 aa34.98■■■■□ 3.19
HMGB1-205ENST00000399494 SGPL1O95470 568 aa34.97■■■■□ 3.19
HMGB1-205ENST00000399494 SH3RF3Q8TEJ3 882 aaPredicted RBP34.97■■■■□ 3.19
HMGB1-205ENST00000399494 CEP290O15078 2479 aa34.97■■■■□ 3.19
HMGB1-205ENST00000399494 TBC1D2Q9BYX2 928 aa34.96■■■■□ 3.19
HMGB1-205ENST00000399494 GPR108Q9NPR9 543 aa34.96■■■■□ 3.19
HMGB1-205ENST00000399494 PNMA3Q9UL41 463 aa34.96■■■■□ 3.19
HMGB1-205ENST00000399494 POLA2Q14181 598 aa34.95■■■■□ 3.19
HMGB1-205ENST00000399494 HTATIP2Q9BUP3 242 aa34.95■■■■□ 3.19
HMGB1-205ENST00000399494 SNRKQ9NRH2 765 aa34.95■■■■□ 3.19
HMGB1-205ENST00000399494 USP17L5A8MUK1 530 aa34.94■■■■□ 3.18
HMGB1-205ENST00000399494 INHAP05111 366 aa34.94■■■■□ 3.18
HMGB1-205ENST00000399494 FAM110CQ1W6H9 321 aa34.94■■■■□ 3.18
HMGB1-205ENST00000399494 COA7Q96BR5 231 aa34.94■■■■□ 3.18
HMGB1-205ENST00000399494 HERC5Q9UII4 1024 aaKnown RBP34.94■■■■□ 3.18
HMGB1-205ENST00000399494 HMGCS2P54868 508 aa34.93■■■■□ 3.18
HMGB1-205ENST00000399494 SH3D19Q5HYK7 790 aa34.93■■■■□ 3.18
HMGB1-205ENST00000399494 PI4KBQ9UBF8 816 aa34.93■■■■□ 3.18
HMGB1-205ENST00000399494 ATP8B2P98198 1209 aa34.92■■■■□ 3.18
HMGB1-205ENST00000399494 TNNI3KQ59H18 835 aa34.92■■■■□ 3.18
HMGB1-205ENST00000399494 NAA16Q6N069 864 aaPredicted RBP34.92■■■■□ 3.18
HMGB1-205ENST00000399494 CHRDL2Q6WN34 429 aa34.92■■■■□ 3.18
HMGB1-205ENST00000399494 SSH3Q8TE77 659 aa34.92■■■■□ 3.18
HMGB1-205ENST00000399494 NOL10Q9BSC4 688 aaKnown RBP34.92■■■■□ 3.18
HMGB1-205ENST00000399494 FPGT-TNNI3KV9GXZ4 949 aa34.92■■■■□ 3.18
HMGB1-205ENST00000399494 BAG3O95817 575 aa34.91■■■■□ 3.18
HMGB1-205ENST00000399494 GCLCP48506 637 aaPredicted RBP34.91■■■■□ 3.18
HMGB1-205ENST00000399494 PPP4CP60510 307 aa34.91■■■■□ 3.18
HMGB1-205ENST00000399494 TTC39AQ5SRH9 613 aa34.91■■■■□ 3.18
HMGB1-205ENST00000399494 DBNDD2Q9BQY9 259 aa34.91■■■■□ 3.18
HMGB1-205ENST00000399494 DHX36Q9H2U1 1008 aaKnown RBP34.91■■■■□ 3.18
HMGB1-205ENST00000399494 AATFQ9NY61 560 aaKnown RBP eCLIP34.91■■■■□ 3.18
HMGB1-205ENST00000399494 FARP2O94887 1054 aaPredicted RBP34.9■■■■□ 3.18
HMGB1-205ENST00000399494 PABPC4Q13310 644 aaKnown RBP eCLIP34.9■■■■□ 3.18
HMGB1-205ENST00000399494 CCDC158Q5M9N0 1113 aa34.9■■■■□ 3.18
HMGB1-205ENST00000399494 CYP2E1P05181 493 aaPredicted RBP34.89■■■■□ 3.18
HMGB1-205ENST00000399494 CAPN2P17655 700 aa34.89■■■■□ 3.18
HMGB1-205ENST00000399494 ASCC2Q9H1I8 757 aaPredicted RBP34.89■■■■□ 3.18
HMGB1-205ENST00000399494 AS3MTQ9HBK9 375 aa34.89■■■■□ 3.18
HMGB1-205ENST00000399494 PAK6Q9NQU5 681 aaPredicted RBP34.89■■■■□ 3.18
HMGB1-205ENST00000399494 DOCK3Q8IZD9 2030 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 LOC285556D6RIA3 1793 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 ZBTB7BO15156 539 aaPredicted RBP34.88■■■■□ 3.17
HMGB1-205ENST00000399494 TFRCP02786 760 aaKnown RBP34.88■■■■□ 3.17
HMGB1-205ENST00000399494 PLCG2P16885 1265 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 ADGRA1Q86SQ6 560 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 TGFBRAP1Q8WUH2 860 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 DEFB118Q96PH6 123 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 WDR18Q9BV38 432 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 TAOK2Q9UL54 1235 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 ATAD5Q96QE3 1844 aa34.88■■■■□ 3.17
HMGB1-205ENST00000399494 JAG1P78504 1218 aa34.87■■■■□ 3.17
HMGB1-205ENST00000399494 METTL16Q86W50 562 aaKnown RBP34.87■■■■□ 3.17
HMGB1-205ENST00000399494 ZNF512BQ96KM6 892 aaPredicted RBP34.87■■■■□ 3.17
HMGB1-205ENST00000399494 RBM27Q9P2N5 1060 aaKnown RBP34.87■■■■□ 3.17
HMGB1-205ENST00000399494 FOXP4Q8IVH2 680 aaPredicted RBP34.86■■■■□ 3.17
HMGB1-205ENST00000399494 MAPKAPK5Q8IW41 473 aa34.86■■■■□ 3.17
HMGB1-205ENST00000399494 C1orf115Q9H7X2 142 aa34.86■■■■□ 3.17
HMGB1-205ENST00000399494 GJD2Q9UKL4 321 aa34.86■■■■□ 3.17
HMGB1-205ENST00000399494 NR2E3Q9Y5X4 410 aa34.86■■■■□ 3.17
HMGB1-205ENST00000399494 SURF6O75683 361 aaKnown RBP34.85■■■■□ 3.17
HMGB1-205ENST00000399494 OS9Q13438 667 aaPredicted RBP34.85■■■■□ 3.17
HMGB1-205ENST00000399494 CRISPLD2Q9H0B8 497 aa34.85■■■■□ 3.17
HMGB1-205ENST00000399494 DNAJC18Q9H819 358 aa34.85■■■■□ 3.17
HMGB1-205ENST00000399494 COG6Q9Y2V7 657 aa34.85■■■■□ 3.17
HMGB1-205ENST00000399494 TRIOBPQ9H2D6 2365 aa34.84■■■■□ 3.17
HMGB1-205ENST00000399494 SIPA1L1O43166 1804 aa34.84■■■■□ 3.17
HMGB1-205ENST00000399494 BACE1P56817 501 aa34.84■■■■□ 3.17
HMGB1-205ENST00000399494 DDX19BQ9UMR2 479 aa34.84■■■■□ 3.17
HMGB1-205ENST00000399494 FLT1P17948 1338 aa34.83■■■■□ 3.17
HMGB1-205ENST00000399494 IGSF3O75054 1194 aa34.83■■■■□ 3.17
HMGB1-205ENST00000399494 ASNSP08243 561 aa34.83■■■■□ 3.17
HMGB1-205ENST00000399494 ZAP70P43403 619 aa34.83■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms