RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 STK11IPQ8N1F8 1099 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 LCORLQ8N3X6 602 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 STAG1Q8WVM7 1258 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 ZKSCAN3Q9BRR0 538 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 SLC4A4Q9Y6R1 1079 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 NID2Q14112 1375 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 WTAPQ15007 396 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 SPECC1Q5M775 1068 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 KCNJ14Q9UNX9 436 aa29.09■■■□□ 2.25
C9orf40-201ENST00000376854 WNK3Q9BYP7 1800 aa29.08■■■□□ 2.25
C9orf40-201ENST00000376854 GNAT2P19087 354 aa29.08■■■□□ 2.25
C9orf40-201ENST00000376854 CRKLP46109 303 aaKnown RBP29.08■■■□□ 2.25
C9orf40-201ENST00000376854 ARAP2Q8WZ64 1704 aa29.08■■■□□ 2.25
C9orf40-201ENST00000376854 TOB1P50616 345 aaPredicted RBP29.08■■■□□ 2.25
C9orf40-201ENST00000376854 UTP14CQ5TAP6 766 aaKnown RBP29.08■■■□□ 2.25
C9orf40-201ENST00000376854 SYT10Q6XYQ8 523 aa29.08■■■□□ 2.25
C9orf40-201ENST00000376854 CCDC87Q9NVE4 849 aa29.08■■■□□ 2.25
C9orf40-201ENST00000376854 MYO1BO43795 1136 aa29.07■■■□□ 2.24
C9orf40-201ENST00000376854 ATP6V1AP38606 617 aa29.07■■■□□ 2.24
C9orf40-201ENST00000376854 FANCLQ9NW38 375 aa29.07■■■□□ 2.24
C9orf40-201ENST00000376854 FOXN1O15353 648 aa29.06■■■□□ 2.24
C9orf40-201ENST00000376854 ZNF397Q8NF99 534 aaPredicted RBP29.06■■■□□ 2.24
C9orf40-201ENST00000376854 HOOK1Q9UJC3 728 aaKnown RBP29.06■■■□□ 2.24
C9orf40-201ENST00000376854 PNPLA7Q6ZV29 1317 aa29.06■■■□□ 2.24
C9orf40-201ENST00000376854 ERICH2A1L162 156 aa29.06■■■□□ 2.24
C9orf40-201ENST00000376854 BCAMP50895 628 aa29.06■■■□□ 2.24
C9orf40-201ENST00000376854 MDM2Q00987 491 aaPredicted RBP29.06■■■□□ 2.24
C9orf40-201ENST00000376854 ELOA2Q8IYF1 753 aaPredicted RBP29.06■■■□□ 2.24
C9orf40-201ENST00000376854 DDX41Q9UJV9 622 aaKnown RBP29.06■■■□□ 2.24
C9orf40-201ENST00000376854 TIAM2Q8IVF5 1701 aa29.06■■■□□ 2.24
C9orf40-201ENST00000376854 ITPK1Q13572 414 aa29.05■■■□□ 2.24
C9orf40-201ENST00000376854 ELF2Q15723 593 aa29.05■■■□□ 2.24
C9orf40-201ENST00000376854 DDB1Q16531 1140 aa29.05■■■□□ 2.24
C9orf40-201ENST00000376854 VSTM4Q8IW00 320 aa29.05■■■□□ 2.24
C9orf40-201ENST00000376854 CCDC82Q8N4S0 544 aa29.05■■■□□ 2.24
C9orf40-201ENST00000376854 FOXP1Q9H334 677 aaPredicted RBP29.05■■■□□ 2.24
C9orf40-201ENST00000376854 L2HGDHQ9H9P8 463 aa29.05■■■□□ 2.24
C9orf40-201ENST00000376854 BMP6P22004 513 aa29.05■■■□□ 2.24
C9orf40-201ENST00000376854 RILPL1Q5EBL4 403 aa29.05■■■□□ 2.24
C9orf40-201ENST00000376854 TUBB4AP04350 444 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 PDE4BQ07343 736 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 FBXO2Q9UK22 296 aaPredicted RBP29.04■■■□□ 2.24
C9orf40-201ENST00000376854 COL22A1Q8NFW1 1626 aaPredicted RBP29.04■■■□□ 2.24
C9orf40-201ENST00000376854 SPATA31A1Q5TZJ5 1347 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 CCP110O43303 1012 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 DEXIO95424 95 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 PTPREP23469 700 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 GRIN1Q05586 938 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 KMT5BQ4FZB7 885 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 CRACR2BQ8N4Y2 399 aaPredicted RBP29.04■■■□□ 2.24
C9orf40-201ENST00000376854 MARCH10Q8NA82 808 aaPredicted RBP29.04■■■□□ 2.24
C9orf40-201ENST00000376854 MIGA1Q8NAN2 632 aa29.04■■■□□ 2.24
C9orf40-201ENST00000376854 UTP14AQ9BVJ6 771 aaKnown RBP29.04■■■□□ 2.24
C9orf40-201ENST00000376854 GTPBP4Q9BZE4 634 aaKnown RBP29.04■■■□□ 2.24
C9orf40-201ENST00000376854 DOCK2Q92608 1830 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 CCDC196A0A1B0GTZ2 297 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 CAMTA2O94983 1202 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 TOP1P11387 765 aaKnown RBP29.03■■■□□ 2.24
C9orf40-201ENST00000376854 HOMER1Q86YM7 354 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 CMTR1Q8N1G2 835 aaKnown RBP29.03■■■□□ 2.24
C9orf40-201ENST00000376854 TMTC2Q8N394 836 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 LOC102724428A0A0B4J2F2 783 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 TMEM232C9JQI7 657 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 SIK1P57059 783 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 POSTNQ15063 836 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 TMX1Q9H3N1 280 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 LRP2BPQ9P2M1 347 aa29.03■■■□□ 2.24
C9orf40-201ENST00000376854 RNF41Q9H4P4 317 aaPredicted RBP29.02■■■□□ 2.24
C9orf40-201ENST00000376854 MAN1B1Q9UKM7 699 aa29.02■■■□□ 2.24
C9orf40-201ENST00000376854 NR5A1Q13285 461 aa29.02■■■□□ 2.24
C9orf40-201ENST00000376854 NUP133Q8WUM0 1156 aa29.02■■■□□ 2.24
C9orf40-201ENST00000376854 MTA3Q9BTC8 594 aa29.02■■■□□ 2.24
C9orf40-201ENST00000376854 POLR2DO15514 142 aaKnown RBP29.01■■■□□ 2.23
C9orf40-201ENST00000376854 IGHMBP2P38935 993 aaKnown RBP29.01■■■□□ 2.23
C9orf40-201ENST00000376854 FANCBQ8NB91 859 aa29.01■■■□□ 2.23
C9orf40-201ENST00000376854 PCDHB6Q9Y5E3 794 aa29.01■■■□□ 2.23
C9orf40-201ENST00000376854 CHD4Q14839 1912 aa29.01■■■□□ 2.23
C9orf40-201ENST00000376854 AHDC1Q5TGY3 1603 aaPredicted RBP29■■■□□ 2.23
C9orf40-201ENST00000376854 CCDC152Q4G0S7 254 aa29■■■□□ 2.23
C9orf40-201ENST00000376854 ZNF654Q8IZM8 581 aa29■■■□□ 2.23
C9orf40-201ENST00000376854 PTPN21Q16825 1174 aa29■■■□□ 2.23
C9orf40-201ENST00000376854 CCDC93Q567U6 631 aa29■■■□□ 2.23
C9orf40-201ENST00000376854 FBXO38Q6PIJ6 1188 aa29■■■□□ 2.23
C9orf40-201ENST00000376854 SERTAD1Q9UHV2 236 aa29■■■□□ 2.23
C9orf40-201ENST00000376854 RCAN1P53805 252 aa28.99■■■□□ 2.23
C9orf40-201ENST00000376854 PPARAQ07869 468 aa28.99■■■□□ 2.23
C9orf40-201ENST00000376854 GOLGA8FQ08AF8 430 aa28.99■■■□□ 2.23
C9orf40-201ENST00000376854 GOLGA8DPQ0D2H9 430 aa28.99■■■□□ 2.23
C9orf40-201ENST00000376854 UBAC1Q9BSL1 405 aa28.99■■■□□ 2.23
C9orf40-201ENST00000376854 INTS13Q9NVM9 706 aa28.99■■■□□ 2.23
C9orf40-201ENST00000376854 MORC2Q9Y6X9 1032 aaPredicted RBP28.99■■■□□ 2.23
C9orf40-201ENST00000376854 ETF1P62495 437 aaKnown RBP28.99■■■□□ 2.23
C9orf40-201ENST00000376854 NT5DC1Q5TFE4 455 aa28.99■■■□□ 2.23
C9orf40-201ENST00000376854 ZNF579Q8NAF0 562 aaKnown RBP28.99■■■□□ 2.23
C9orf40-201ENST00000376854 NIP7Q9Y221 180 aaKnown RBP eCLIP28.99■■■□□ 2.23
C9orf40-201ENST00000376854 PRR29P0C7W0 189 aa28.98■■■□□ 2.23
C9orf40-201ENST00000376854 MYH14Q7Z406 1995 aaKnown RBP28.98■■■□□ 2.23
C9orf40-201ENST00000376854 NTSR2O95665 410 aa28.98■■■□□ 2.23
C9orf40-201ENST00000376854 HSP90AA4PQ58FG1 418 aa28.98■■■□□ 2.23
C9orf40-201ENST00000376854 MLKLQ8NB16 471 aa28.98■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms