RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 RTKN2Q8IZC4 609 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 MXD3Q9BW11 206 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 PSME4Q14997 1843 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 ZBTB43O43298 467 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 METAP2P50579 478 aaKnown RBP eCLIP18.19■□□□□ 0.5
LSM6-201ENST00000296581 TGFB2P61812 414 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 DACT2Q5SW24 774 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 HHIPL2Q6UWX4 724 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 PSMD1Q99460 953 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 ZKSCAN3Q9BRR0 538 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 UBAC1Q9BSL1 405 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 KCNQ5Q9NR82 932 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 MYH1P12882 1939 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 CCDC69A6NI79 296 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 FDPSP14324 419 aaKnown RBP18.19■□□□□ 0.5
LSM6-201ENST00000296581 POLD1P28340 1107 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 RCAN1P53805 252 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 PDE4BQ07343 736 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 MAPKAPK5Q8IW41 473 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 SLC12A7Q9Y666 1083 aa18.19■□□□□ 0.5
LSM6-201ENST00000296581 PRDM1O75626 825 aa18.18■□□□□ 0.5
LSM6-201ENST00000296581 CLCN1P35523 988 aa18.18■□□□□ 0.5
LSM6-201ENST00000296581 RAB11FIP4Q86YS3 637 aa18.18■□□□□ 0.5
LSM6-201ENST00000296581 AMOTL1Q8IY63 956 aa18.18■□□□□ 0.5
LSM6-201ENST00000296581 ZSCAN10Q96SZ4 725 aaPredicted RBP18.18■□□□□ 0.5
LSM6-201ENST00000296581 MRIQ9BWK5 157 aa18.18■□□□□ 0.5
LSM6-201ENST00000296581 ATF5Q9Y2D1 282 aaPredicted RBP18.18■□□□□ 0.5
LSM6-201ENST00000296581 ADAMTSL1Q8N6G6 1762 aa18.18■□□□□ 0.5
LSM6-201ENST00000296581 TNKSO95271 1327 aa18.18■□□□□ 0.5
LSM6-201ENST00000296581 FLT1P17948 1338 aa18.18■□□□□ 0.5
LSM6-201ENST00000296581 F8W031 263 aaPredicted RBP18.18■□□□□ 0.5
LSM6-201ENST00000296581 RANBP6O60518 1105 aaKnown RBP18.18■□□□□ 0.5
LSM6-201ENST00000296581 ILDR1Q86SU0 546 aaPredicted RBP18.18■□□□□ 0.5
LSM6-201ENST00000296581 BRCA1P38398 1863 aaKnown RBP18.17■□□□□ 0.5
LSM6-201ENST00000296581 USP17L3A6NCW0 530 aa18.17■□□□□ 0.5
LSM6-201ENST00000296581 USP17L4A6NCW7 530 aa18.17■□□□□ 0.5
LSM6-201ENST00000296581 CPLX1O14810 134 aa18.17■□□□□ 0.5
LSM6-201ENST00000296581 USP17L1Q7RTZ2 530 aa18.17■□□□□ 0.5
LSM6-201ENST00000296581 MICU3Q86XE3 530 aa18.17■□□□□ 0.5
LSM6-201ENST00000296581 FAM217BQ9NTX9 383 aaPredicted RBP18.17■□□□□ 0.5
LSM6-201ENST00000296581 GOLGA8AA7E2F4 631 aa18.16■□□□□ 0.5
LSM6-201ENST00000296581 PPIP5K2O43314 1243 aa18.16■□□□□ 0.5
LSM6-201ENST00000296581 CDC27P30260 824 aa18.16■□□□□ 0.5
LSM6-201ENST00000296581 SYNE3Q6ZMZ3 975 aa18.16■□□□□ 0.5
LSM6-201ENST00000296581 IQCA1Q86XH1 822 aa18.16■□□□□ 0.5
LSM6-201ENST00000296581 ENAHQ8N8S7 591 aaPredicted RBP18.16■□□□□ 0.5
LSM6-201ENST00000296581 TEKT1Q969V4 418 aa18.16■□□□□ 0.5
LSM6-201ENST00000296581 ECM29Q5VYK3 1845 aa18.16■□□□□ 0.5
LSM6-201ENST00000296581 PRPF40AO75400 957 aaKnown RBP18.16■□□□□ 0.5
LSM6-201ENST00000296581 HDLBPQ00341 1268 aaKnown RBP18.16■□□□□ 0.5
LSM6-201ENST00000296581 R3HDM1Q15032 1099 aaKnown RBP18.16■□□□□ 0.5
LSM6-201ENST00000296581 TMEM87AQ8NBN3 555 aa18.16■□□□□ 0.5
LSM6-201ENST00000296581 UPF1Q92900 1129 aaKnown RBP eCLIP18.16■□□□□ 0.5
LSM6-201ENST00000296581 CDKL5O76039 1030 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 RXRAP19793 462 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 ADD1P35611 737 aaKnown RBP18.15■□□□□ 0.5
LSM6-201ENST00000296581 NTRK3Q16288 839 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 SOGA3Q5TF21 947 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 RGS22Q8NE09 1264 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 MYL10Q9BUA6 226 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 VPS33BQ9H267 617 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 PIM2Q9P1W9 311 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 H3BQV1 296 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 POLR3DP05423 398 aaPredicted RBP18.15■□□□□ 0.5
LSM6-201ENST00000296581 SCNN1DP51172 638 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 PLCD1P51178 756 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 KLHL40Q2TBA0 621 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 FOXD4L6Q3SYB3 417 aaPredicted RBP18.15■□□□□ 0.5
LSM6-201ENST00000296581 L1TD1Q5T7N2 865 aaKnown RBP18.15■□□□□ 0.5
LSM6-201ENST00000296581 IFFO2Q5TF58 517 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 CPLX2Q6PUV4 134 aaKnown RBP18.15■□□□□ 0.5
LSM6-201ENST00000296581 FOXD4L3Q6VB84 417 aaPredicted RBP18.15■□□□□ 0.5
LSM6-201ENST00000296581 ZNF654Q8IZM8 581 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 SGIP1Q9BQI5 828 aa18.15■□□□□ 0.5
LSM6-201ENST00000296581 SAP30BPQ9UHR5 308 aaKnown RBP18.15■□□□□ 0.5
LSM6-201ENST00000296581 YDJCA8MPS7 323 aa18.14■□□□□ 0.49
LSM6-201ENST00000296581 CRKP46108 304 aa18.14■□□□□ 0.49
LSM6-201ENST00000296581 RESTQ13127 1097 aa18.14■□□□□ 0.49
LSM6-201ENST00000296581 APOBEC3HQ6NTF7 200 aaKnown RBP18.14■□□□□ 0.49
LSM6-201ENST00000296581 DYNLL2Q96FJ2 89 aa18.14■□□□□ 0.49
LSM6-201ENST00000296581 ZDHHC15Q96MV8 337 aa18.14■□□□□ 0.49
LSM6-201ENST00000296581 ORC3Q9UBD5 711 aaPredicted RBP18.14■□□□□ 0.49
LSM6-201ENST00000296581 SLC4A8Q2Y0W8 1093 aa18.14■□□□□ 0.49
LSM6-201ENST00000296581 FERMT3Q86UX7 667 aa18.14■□□□□ 0.49
LSM6-201ENST00000296581 CNPY2Q9Y2B0 182 aa18.14■□□□□ 0.49
LSM6-201ENST00000296581 WDHD1O75717 1129 aaPredicted RBP18.13■□□□□ 0.49
LSM6-201ENST00000296581 FAM47AQ5JRC9 791 aa18.13■□□□□ 0.49
LSM6-201ENST00000296581 IFIT1BQ5T764 474 aaKnown RBP18.13■□□□□ 0.49
LSM6-201ENST00000296581 C16orf86Q6ZW13 317 aa18.13■□□□□ 0.49
LSM6-201ENST00000296581 ZSCAN16Q9H4T2 348 aaPredicted RBP18.13■□□□□ 0.49
LSM6-201ENST00000296581 USP40Q9NVE5 1235 aa18.13■□□□□ 0.49
LSM6-201ENST00000296581 PRDM4Q9UKN5 801 aa18.13■□□□□ 0.49
LSM6-201ENST00000296581 MYH15Q9Y2K3 1946 aa18.13■□□□□ 0.49
LSM6-201ENST00000296581 PPFIA3O75145 1194 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 DNM1Q05193 864 aaKnown RBP18.12■□□□□ 0.49
LSM6-201ENST00000296581 PDE4CQ08493 712 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 PPP2R5BQ15173 497 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 RTN1Q16799 776 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 CDC42EP5Q6NZY7 148 aa18.12■□□□□ 0.49
LSM6-201ENST00000296581 KIAA0825Q8IV33 1275 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms