RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 AOC3Q16853 763 aa13.51□□□□□ -0.25
SYNGAP1-201ENST00000293748 RABL6Q3YEC7 729 aaPredicted RBP13.51□□□□□ -0.25
SYNGAP1-201ENST00000293748 SPTY2D1Q68D10 685 aaPredicted RBP13.51□□□□□ -0.25
SYNGAP1-201ENST00000293748 LRP2BPQ9P2M1 347 aa13.51□□□□□ -0.25
SYNGAP1-201ENST00000293748 YBX3P16989 372 aaKnown RBP eCLIP13.5□□□□□ -0.251e-7■■■■□ 23.4
SYNGAP1-201ENST00000293748 TUBB4BP68371 445 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 CCDC102BQ68D86 513 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 WWC2Q6AWC2 1192 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 SMC5Q8IY18 1101 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 IPO4Q8TEX9 1081 aaKnown RBP13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 FEZ1Q99689 392 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 BIN1O00499 593 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 POTEJP0CG39 1038 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 ATP2B2Q01814 1243 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 HLTFQ14527 1009 aaKnown RBP eCLIP13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 TBC1D22AQ8WUA7 517 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 COPRSQ9NQ92 184 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 MAST3O60307 1309 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 MYO3BQ8WXR4 1341 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 CKAP4Q07065 602 aaKnown RBP13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 GPATCH11Q8N954 259 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 TBC1D16Q8TBP0 767 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 RAB34Q9BZG1 259 aa13.5□□□□□ -0.25
SYNGAP1-201ENST00000293748 ZBTB7BO15156 539 aaPredicted RBP13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 DESP17661 470 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 C3orf67Q6ZVT6 689 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 GOLGA8BA8MQT2 603 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 TAF5LO75529 589 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 RAB3GAP1Q15042 981 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 TDRD12Q587J7 1177 aaKnown RBP13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 CCDC178Q5BJE1 867 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 ANKRD44Q8N8A2 993 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 DOK7Q18PE1 504 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 CTCFLQ8NI51 663 aaPredicted RBP13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 NAPBQ9H115 298 aa13.49□□□□□ -0.25
SYNGAP1-201ENST00000293748 GSTTP1A0A1W2PQM5 241 aa13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 ZNF213O14771 459 aa13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 PDE8BO95263 885 aa13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 ZNF830Q96NB3 372 aaPredicted RBP13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 DBNDD1Q9H9R9 158 aa13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 DNAI1Q9UI46 699 aa13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 ECE2O60344 883 aa13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 IBSPP21815 317 aaPredicted RBP13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 TTC12Q9H892 705 aaPredicted RBP13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 ZNF287Q9HBT7 754 aa13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 DENND2AQ9ULE3 1009 aa13.48□□□□□ -0.25
SYNGAP1-201ENST00000293748 CTAGE15A4D2H0 777 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 CTAGE8P0CG41 777 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 GTF2A1P52655 376 aaPredicted RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 CASP7P55210 303 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 EAPPQ56P03 285 aaPredicted RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 EPHA10Q5JZY3 1008 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 CTAGE6Q86UF2 777 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 TICAM2Q86XR7 235 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 CTAGE4Q8IX94 777 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 RNF41Q9H4P4 317 aaPredicted RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 BCCIPQ9P287 314 aaKnown RBP eCLIP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 TNNQ9UQP3 1299 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 PCDHB15Q9Y5E8 787 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 SLC12A7Q9Y666 1083 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 USP17L3A6NCW0 530 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 USP17L4A6NCW7 530 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 LDHCP07864 332 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 USP17L1Q7RTZ2 530 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 USP48Q86UV5 1035 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 CEP112Q8N8E3 955 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 HACL1Q9UJ83 578 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 PA2G4Q9UQ80 394 aaKnown RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 TUBBP07437 444 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 RLBP1P12271 317 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 KCNA3P22001 575 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 MTIF2P46199 727 aaKnown RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 UBASH3AP57075 661 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 SSRP1Q08945 709 aaKnown RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 ANO6Q4KMQ2 910 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 FAM114A1Q8IWE2 563 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 SMAP1Q8IYB5 467 aaPredicted RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 WDR66Q8TBY9 1149 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 ORC3Q9UBD5 711 aaPredicted RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 GOLGA8AA7E2F4 631 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 VEGFAP15692 232 aaPredicted RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 MTX1Q13505 466 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 CEP85Q6P2H3 762 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 NEK1Q96PY6 1258 aa13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 CCDC8Q9H0W5 538 aaPredicted RBP13.47□□□□□ -0.25
SYNGAP1-201ENST00000293748 RPS12P25398 132 aaKnown RBP13.46□□□□□ -0.25
SYNGAP1-201ENST00000293748 ZSWIM4Q9H7M6 989 aa13.46□□□□□ -0.25
SYNGAP1-201ENST00000293748 HSF2BPO75031 334 aa13.46□□□□□ -0.25
SYNGAP1-201ENST00000293748 RAD17O75943 681 aa13.46□□□□□ -0.25
SYNGAP1-201ENST00000293748 SDSP20132 328 aa13.46□□□□□ -0.25
SYNGAP1-201ENST00000293748 CCT2P78371 535 aaKnown RBP13.46□□□□□ -0.25
SYNGAP1-201ENST00000293748 SPAG1Q07617 926 aa13.46□□□□□ -0.25
SYNGAP1-201ENST00000293748 HSPA4P34932 840 aa13.46□□□□□ -0.26
SYNGAP1-201ENST00000293748 MAATS1Q7Z4T9 603 aa13.46□□□□□ -0.26
SYNGAP1-201ENST00000293748 IQCA1Q86XH1 822 aa13.46□□□□□ -0.26
SYNGAP1-201ENST00000293748 KCNG4Q8TDN1 519 aa13.46□□□□□ -0.26
SYNGAP1-201ENST00000293748 BCORQ6W2J9 1755 aa13.46□□□□□ -0.26
SYNGAP1-201ENST00000293748 GOLIM4O00461 696 aa13.46□□□□□ -0.26
SYNGAP1-201ENST00000293748 NF2P35240 595 aa13.46□□□□□ -0.26
SYNGAP1-201ENST00000293748 SSR1P43307 286 aaKnown RBP13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms