RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 NCOA2Q15596 1464 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 TTC22Q5TAA0 569 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 NDUFAB1O14561 156 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 FAM47CQ5HY64 1035 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 SND1Q7KZF4 910 aaKnown RBP eCLIP12.63□□□□□ -0.39
PTPN4-201ENST00000263708 DBN1Q16643 649 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 CNNM4Q6P4Q7 775 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 IFT20Q8IY31 132 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 BCAP29Q9UHQ4 241 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 TRIM50Q86XT4 487 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 KSR1Q8IVT5 923 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 CCDC105Q8IYK2 499 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 MYO1AQ9UBC5 1043 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 RBM8AQ9Y5S9 174 aaKnown RBP12.62□□□□□ -0.39
PTPN4-201ENST00000263708 USH1GQ495M9 461 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.62□□□□□ -0.39
PTPN4-201ENST00000263708 FGD5Q6ZNL6 1462 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 CD19P15391 556 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 NBPF8Q3BBV2 869 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 NBPF14Q5TI25 921 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 CHPF2Q9P2E5 772 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 SUFUQ9UMX1 484 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 PALM3A6NDB9 673 aaPredicted RBP12.62□□□□□ -0.39
PTPN4-201ENST00000263708 FBXW4P57775 412 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 NCAPH2Q6IBW4 605 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 HDAC11Q96DB2 347 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 PLCB1Q9NQ66 1216 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 NR1I2O75469 434 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 BAG2O95816 211 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 TYRO3Q06418 890 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 BEND3Q5T5X7 828 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 KRT28Q7Z3Y7 464 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 S100BP04271 92 aaPredicted RBP12.62□□□□□ -0.39
PTPN4-201ENST00000263708 P4HA1P13674 534 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 MMEL1Q495T6 779 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 TTC30BQ8N4P2 665 aa12.62□□□□□ -0.39
PTPN4-201ENST00000263708 GCNT3O95395 438 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 ANXA1P04083 346 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 CHRNA2Q15822 529 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 TMX3Q96JJ7 454 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 RARSP54136 660 aaKnown RBP12.61□□□□□ -0.39
PTPN4-201ENST00000263708 PNMA8AQ86V59 439 aaPredicted RBP12.61□□□□□ -0.39
PTPN4-201ENST00000263708 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.61□□□□□ -0.39
PTPN4-201ENST00000263708 CCDC141Q6ZP82 1450 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 ANKRD35Q8N283 1001 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 CAPN9O14815 690 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 YARSP54577 528 aaKnown RBP12.61□□□□□ -0.39
PTPN4-201ENST00000263708 CCDC93Q567U6 631 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 GPIHBP1Q8IV16 184 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 CTAGE3PQ8IX95 158 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 ANKRD20A3Q5VUR7 823 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 IQUBQ8NA54 791 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 ST7Q9NRC1 585 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 SESN3P58005 492 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 APOBRQ0VD83 1088 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 CTTNBP2NLQ9P2B4 639 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 MAPK8IP1Q9UQF2 711 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 ACBD5Q5T8D3 534 aaPredicted RBP12.61□□□□□ -0.39
PTPN4-201ENST00000263708 MRPL44Q9H9J2 332 aaKnown RBP12.61□□□□□ -0.39
PTPN4-201ENST00000263708 SPC25Q9HBM1 224 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 PDE4DQ08499 809 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 EAPPQ56P03 285 aaPredicted RBP12.61□□□□□ -0.39
PTPN4-201ENST00000263708 EYA3Q99504 573 aa12.61□□□□□ -0.39
PTPN4-201ENST00000263708 ATICP31939 592 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 INPP5BP32019 993 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 PDCD2Q16342 344 aaPredicted RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 PALM2Q8IXS6 379 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 ORC6Q9Y5N6 252 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 VPS16Q9H269 839 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 CCDC68Q9H2F9 335 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 RASSF4Q9H2L5 321 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 RTCBQ9Y3I0 505 aaKnown RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 MYCT1Q8N699 235 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 SPDYE1Q8NFV5 336 aaPredicted RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 RBM17Q96I25 401 aaKnown RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 HFM1A2PYH4 1435 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 ACRBPQ8NEB7 543 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 PSMB7Q99436 277 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 PHF8Q9UPP1 1060 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 KLHL7Q8IXQ5 586 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 RNF168Q8IYW5 571 aaPredicted RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 NAPGQ99747 312 aaPredicted RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 TACO1Q9BSH4 297 aaKnown RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 RAD51AP2Q09MP3 1159 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 SLC12A1Q13621 1099 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 HAUS3Q68CZ6 603 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 TPX2Q9ULW0 747 aaKnown RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 DHX29Q7Z478 1369 aaKnown RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 PFDN6O15212 129 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 SORBS3O60504 671 aa12.6□□□□□ -0.39
PTPN4-201ENST00000263708 FAM193BQ96PV7 902 aaPredicted RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 ZNF277Q9NRM2 450 aaPredicted RBP12.6□□□□□ -0.39
PTPN4-201ENST00000263708 RNF8O76064 485 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 SYF2O95926 243 aaKnown RBP12.59□□□□□ -0.39
PTPN4-201ENST00000263708 FOXD4Q12950 439 aaPredicted RBP12.59□□□□□ -0.39
PTPN4-201ENST00000263708 MAP3K21Q5TCX8 1036 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 CYP26C1Q6V0L0 522 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 SCHIP1Q9P0W5 487 aaPredicted RBP12.59□□□□□ -0.39
PTPN4-201ENST00000263708 RAPGEF3O95398 923 aa12.59□□□□□ -0.39
PTPN4-201ENST00000263708 RYBPQ8N488 228 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms