RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SYNE1Q8NF91 8797 aaKnown RBP1.03□□□□□ -2.24
SCN1A-221ENST00000641996 KRTAP4-9Q9BYQ8 210 aa1.03□□□□□ -2.24
SCN1A-221ENST00000641996 KRTAP9-9Q9BYP9 154 aa1.03□□□□□ -2.25
SCN1A-221ENST00000641996 MDN1Q9NU22 5596 aa1.02□□□□□ -2.25
SCN1A-221ENST00000641996 MT1GP13640 62 aa1.02□□□□□ -2.25
SCN1A-221ENST00000641996 KRTAP6-2Q3LI66 62 aa1.01□□□□□ -2.25
SCN1A-221ENST00000641996 KRTAP5-2Q701N4 177 aa1□□□□□ -2.25
SCN1A-221ENST00000641996 KRTAP4-7Q9BYR0 210 aa1□□□□□ -2.25
SCN1A-221ENST00000641996 FAT3Q8TDW7 4589 aa0.99□□□□□ -2.25
SCN1A-221ENST00000641996 OBSCNQ5VST9 7968 aa0.99□□□□□ -2.25
SCN1A-221ENST00000641996 LOC100996750A0A140TA64 210 aa0.98□□□□□ -2.25
SCN1A-221ENST00000641996 KRTAP19-1Q8IUB9 90 aa0.97□□□□□ -2.25
SCN1A-221ENST00000641996 DSTQ03001 7570 aaKnown RBP0.97□□□□□ -2.25
SCN1A-221ENST00000641996 FCGBPQ9Y6R7 5405 aaPredicted RBP0.94□□□□□ -2.26
SCN1A-221ENST00000641996 GPR98Q8WXG9 6306 aa0.94□□□□□ -2.26
SCN1A-221ENST00000641996 MT1XP80297 61 aa0.94□□□□□ -2.26
SCN1A-221ENST00000641996 KRTAP4-1Q9BYQ7 146 aa0.94□□□□□ -2.26
SCN1A-221ENST00000641996 FSIP2Q5CZC0 6907 aa0.93□□□□□ -2.26
SCN1A-221ENST00000641996 MT1HP80294 61 aa0.93□□□□□ -2.26
SCN1A-221ENST00000641996 SPRR2GQ9BYE4 73 aa0.93□□□□□ -2.26
SCN1A-221ENST00000641996 MACF1Q9UPN3 7388 aaKnown RBP0.92□□□□□ -2.26
SCN1A-221ENST00000641996 KRTAP4-11Q9BYQ6 195 aa0.91□□□□□ -2.26
SCN1A-221ENST00000641996 LCE1CQ5T751 118 aa0.9□□□□□ -2.26
SCN1A-221ENST00000641996 LCE1BQ5T7P3 118 aa0.9□□□□□ -2.26
SCN1A-221ENST00000641996 LRP2P98164 4655 aa0.9□□□□□ -2.27
SCN1A-221ENST00000641996 LPAP08519 4548 aa0.9□□□□□ -2.27
SCN1A-221ENST00000641996 MUC12Q9UKN1 5478 aa0.9□□□□□ -2.27
SCN1A-221ENST00000641996 SPRR2FQ96RM1 72 aa0.9□□□□□ -2.27
SCN1A-221ENST00000641996 SPRR2DP22532 72 aa0.89□□□□□ -2.27
SCN1A-221ENST00000641996 MT2AP02795 61 aa0.89□□□□□ -2.27
SCN1A-221ENST00000641996 KRTAP19-3Q7Z4W3 81 aa0.89□□□□□ -2.27
SCN1A-221ENST00000641996 SPRR2BP35325 72 aa0.89□□□□□ -2.27
SCN1A-221ENST00000641996 KRTAP4-3Q9BYR4 195 aa0.89□□□□□ -2.27
SCN1A-221ENST00000641996 MT1FP04733 61 aa0.88□□□□□ -2.27
SCN1A-221ENST00000641996 SPRR2AP35326 72 aa0.87□□□□□ -2.27
SCN1A-221ENST00000641996 MT1LQ93083 61 aa0.87□□□□□ -2.27
SCN1A-221ENST00000641996 KRTAP4-8A0A0G2JLE6 195 aa0.86□□□□□ -2.27
SCN1A-221ENST00000641996 KRTAP4-8Q9BYQ9 185 aa0.86□□□□□ -2.27
SCN1A-221ENST00000641996 KRTAP5-5Q701N2 237 aaPredicted RBP0.86□□□□□ -2.27
SCN1A-221ENST00000641996 MT1AP04731 61 aa0.84□□□□□ -2.27
SCN1A-221ENST00000641996 SPRR2EP22531 72 aa0.84□□□□□ -2.27
SCN1A-221ENST00000641996 KRTAP19-8Q3LI54 63 aa0.84□□□□□ -2.27
SCN1A-221ENST00000641996 NEBP20929 6669 aa0.84□□□□□ -2.27
SCN1A-221ENST00000641996 MUC5BQ9HC84 5762 aaPredicted RBP0.83□□□□□ -2.28
SCN1A-221ENST00000641996 AHNAK2Q8IVF2 5795 aa0.82□□□□□ -2.28
SCN1A-221ENST00000641996 KRTAP19-2Q3LHN2 52 aa0.82□□□□□ -2.28
SCN1A-221ENST00000641996 SYNE2Q8WXH0 6885 aaKnown RBP0.81□□□□□ -2.28
SCN1A-221ENST00000641996 MT1EP04732 61 aa0.8□□□□□ -2.28
SCN1A-221ENST00000641996 KRTAP19-6Q3LI70 58 aa0.8□□□□□ -2.28
SCN1A-221ENST00000641996 MT1BP07438 61 aa0.79□□□□□ -2.28
SCN1A-221ENST00000641996 KRTAP4-6Q9BYQ5 205 aa0.79□□□□□ -2.28
SCN1A-221ENST00000641996 MUC5ACP98088 5654 aa0.79□□□□□ -2.28
SCN1A-221ENST00000641996 MT1MQ8N339 61 aa0.77□□□□□ -2.29
SCN1A-221ENST00000641996 KRTAP6-1Q3LI64 71 aa0.77□□□□□ -2.29
SCN1A-221ENST00000641996 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-221ENST00000641996 KRTAP4-12Q9BQ66 201 aa0.75□□□□□ -2.29
SCN1A-221ENST00000641996 MT4P47944 62 aa0.75□□□□□ -2.29
SCN1A-221ENST00000641996 KRTAP9-1A8MXZ3 250 aaPredicted RBP0.74□□□□□ -2.29
SCN1A-221ENST00000641996 HMCN1Q96RW7 5635 aa0.73□□□□□ -2.29
SCN1A-221ENST00000641996 KRTAP5-9P26371 169 aa0.71□□□□□ -2.3
SCN1A-221ENST00000641996 KRTAP20-1Q3LI63 56 aa0.71□□□□□ -2.3
SCN1A-221ENST00000641996 KRTAP19-7Q3SYF9 63 aa0.71□□□□□ -2.3
SCN1A-221ENST00000641996 AHNAKQ09666 5890 aaKnown RBP0.71□□□□□ -2.3
SCN1A-221ENST00000641996 KRTAP4-4Q9BYR3 166 aa0.69□□□□□ -2.3
SCN1A-221ENST00000641996 MUC19Q7Z5P9 8384 aa0.68□□□□□ -2.3
SCN1A-221ENST00000641996 KRTAP5-3Q6L8H2 238 aa0.68□□□□□ -2.3
SCN1A-221ENST00000641996 KRTAP4-2Q9BYR5 136 aa0.63□□□□□ -2.31
SCN1A-221ENST00000641996 KRTAP20-2Q3LI61 65 aa0.62□□□□□ -2.31
SCN1A-221ENST00000641996 KRTAP5-4Q6L8H1 288 aa0.59□□□□□ -2.31
SCN1A-221ENST00000641996 KRTAP5-8O75690 187 aa0.57□□□□□ -2.32
SCN1A-221ENST00000641996 KRTAP21-1Q3LI58 79 aa0.55□□□□□ -2.32
SCN1A-221ENST00000641996 KRTAP5-1Q6L8H4 278 aa0.53□□□□□ -2.32
SCN1A-221ENST00000641996 KRTAP5-7Q6L8G8 165 aa0.53□□□□□ -2.33
SCN1A-221ENST00000641996 KRTAP5-10Q6L8G5 202 aa0.49□□□□□ -2.33
SCN1A-221ENST00000641996 KRTAP5-11Q6L8G4 156 aa0.46□□□□□ -2.34
SCN1A-221ENST00000641996 PHGR1C9JFL3 82 aa0.38□□□□□ -2.35
SCN1A-221ENST00000641996 MUC16Q8WXI7 14507 aa0.37□□□□□ -2.35
SCN1A-221ENST00000641996 KRTAP21-2Q3LI59 83 aa0.34□□□□□ -2.36
Retrieved 78 of 20,778 RNA–protein pairs in 6.6 ms