RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 UBR4Q5T4S7 5183 aa1.76□□□□□ -2.13
SCN1A-214ENST00000637038 SSPOA2VEC9 5147 aa1.76□□□□□ -2.13
SCN1A-214ENST00000637038 RNF213Q63HN8 5207 aa1.76□□□□□ -2.13
SCN1A-214ENST00000637038 GPR98Q8WXG9 6306 aa1.75□□□□□ -2.13
SCN1A-214ENST00000637038 NEBP20929 6669 aa1.75□□□□□ -2.13
SCN1A-214ENST00000637038 LCE1AQ5T7P2 110 aa1.7□□□□□ -2.14
SCN1A-214ENST00000637038 INE1O15225 51 aa1.69□□□□□ -2.14
SCN1A-214ENST00000637038 SPRR2GQ9BYE4 73 aa1.68□□□□□ -2.14
SCN1A-214ENST00000637038 SPRR2EP22531 72 aa1.67□□□□□ -2.14
SCN1A-214ENST00000637038 SPRR2BP35325 72 aa1.67□□□□□ -2.14
SCN1A-214ENST00000637038 SPRR2AP35326 72 aa1.67□□□□□ -2.14
SCN1A-214ENST00000637038 SPRR5A0A1B0GTR4 108 aa1.67□□□□□ -2.14
SCN1A-214ENST00000637038 KRTAP5-11Q6L8G4 156 aa1.66□□□□□ -2.14
SCN1A-214ENST00000637038 SPRR2DP22532 72 aa1.66□□□□□ -2.14
SCN1A-214ENST00000637038 KRTAP5-9P26371 169 aa1.64□□□□□ -2.15
SCN1A-214ENST00000637038 HMCN1Q96RW7 5635 aa1.64□□□□□ -2.15
SCN1A-214ENST00000637038 LCE3AQ5TA76 89 aa1.63□□□□□ -2.15
SCN1A-214ENST00000637038 MT2AP02795 61 aa1.62□□□□□ -2.15
SCN1A-214ENST00000637038 KRTAP5-2Q701N4 177 aa1.61□□□□□ -2.15
SCN1A-214ENST00000637038 KRTAP8-1Q8IUC2 63 aa1.6□□□□□ -2.15
SCN1A-214ENST00000637038 KRTAP10-12P60413 245 aa1.6□□□□□ -2.15
SCN1A-214ENST00000637038 KRTAP19-8Q3LI54 63 aa1.6□□□□□ -2.15
SCN1A-214ENST00000637038 KRTAP12-3P60328 96 aa1.59□□□□□ -2.15
SCN1A-214ENST00000637038 MT1FP04733 61 aa1.58□□□□□ -2.16
SCN1A-214ENST00000637038 SPRR2FQ96RM1 72 aa1.57□□□□□ -2.16
SCN1A-214ENST00000637038 DSTQ03001 7570 aaKnown RBP1.57□□□□□ -2.16
SCN1A-214ENST00000637038 KRTAP10-5P60370 271 aa1.56□□□□□ -2.16
SCN1A-214ENST00000637038 MT1BP07438 61 aa1.56□□□□□ -2.16
SCN1A-214ENST00000637038 USH2AO75445 5202 aa1.55□□□□□ -2.16
SCN1A-214ENST00000637038 SYNE2Q8WXH0 6885 aaKnown RBP1.55□□□□□ -2.16
SCN1A-214ENST00000637038 MT1XP80297 61 aa1.54□□□□□ -2.16
SCN1A-214ENST00000637038 KRTAP5-7Q6L8G8 165 aa1.52□□□□□ -2.17
SCN1A-214ENST00000637038 KMT2DO14686 5537 aa1.49□□□□□ -2.17
SCN1A-214ENST00000637038 KRTAP10-7P60409 375 aaPredicted RBP1.48□□□□□ -2.17
SCN1A-214ENST00000637038 AHNAKQ09666 5890 aaKnown RBP1.48□□□□□ -2.17
SCN1A-214ENST00000637038 LCE3CQ5T5A8 94 aa1.48□□□□□ -2.17
SCN1A-214ENST00000637038 KRTAP19-5Q3LI72 72 aa1.46□□□□□ -2.18
SCN1A-214ENST00000637038 KRTAP5-1Q6L8H4 278 aa1.46□□□□□ -2.18
SCN1A-214ENST00000637038 KRTAP9-6A8MVA2 160 aa1.45□□□□□ -2.18
SCN1A-214ENST00000637038 KRTAP5-4Q6L8H1 288 aa1.45□□□□□ -2.18
SCN1A-214ENST00000637038 MUC19Q7Z5P9 8384 aa1.45□□□□□ -2.18
SCN1A-214ENST00000637038 FSIP2Q5CZC0 6907 aa1.43□□□□□ -2.18
SCN1A-214ENST00000637038 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
SCN1A-214ENST00000637038 KRTAP12-4P60329 112 aa1.41□□□□□ -2.18
SCN1A-214ENST00000637038 KRTAP19-7Q3SYF9 63 aa1.4□□□□□ -2.19
SCN1A-214ENST00000637038 KRTAP4-4Q9BYR3 166 aa1.4□□□□□ -2.19
SCN1A-214ENST00000637038 FCGBPQ9Y6R7 5405 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-214ENST00000637038 MACF1Q9UPN3 7388 aaKnown RBP1.38□□□□□ -2.19
SCN1A-214ENST00000637038 LCE1FQ5T754 118 aa1.37□□□□□ -2.19
SCN1A-214ENST00000637038 KRTAP5-10Q6L8G5 202 aa1.37□□□□□ -2.19
SCN1A-214ENST00000637038 MT1LQ93083 61 aa1.35□□□□□ -2.19
SCN1A-214ENST00000637038 MT1GP13640 62 aa1.35□□□□□ -2.19
SCN1A-214ENST00000637038 KRTAP5-5Q701N2 237 aaPredicted RBP1.35□□□□□ -2.19
SCN1A-214ENST00000637038 MT1EP04732 61 aa1.35□□□□□ -2.19
SCN1A-214ENST00000637038 LCE1EQ5T753 118 aa1.33□□□□□ -2.2
SCN1A-214ENST00000637038 AHNAK2Q8IVF2 5795 aa1.32□□□□□ -2.2
SCN1A-214ENST00000637038 KRTAP19-3Q7Z4W3 81 aa1.3□□□□□ -2.2
SCN1A-214ENST00000637038 MT4P47944 62 aa1.29□□□□□ -2.2
SCN1A-214ENST00000637038 SYNE1Q8NF91 8797 aaKnown RBP1.28□□□□□ -2.2
SCN1A-214ENST00000637038 MT1MQ8N339 61 aa1.26□□□□□ -2.21
SCN1A-214ENST00000637038 MUC12Q9UKN1 5478 aa1.25□□□□□ -2.21
SCN1A-214ENST00000637038 KRTAP4-3Q9BYR4 195 aa1.24□□□□□ -2.21
SCN1A-214ENST00000637038 MDN1Q9NU22 5596 aa1.22□□□□□ -2.21
SCN1A-214ENST00000637038 MT1AP04731 61 aa1.19□□□□□ -2.22
SCN1A-214ENST00000637038 KRTAP20-2Q3LI61 65 aa1.18□□□□□ -2.22
SCN1A-214ENST00000637038 LCE3EQ5T5B0 92 aa1.17□□□□□ -2.22
SCN1A-214ENST00000637038 LCE3DQ9BYE3 92 aa1.17□□□□□ -2.22
SCN1A-214ENST00000637038 MUC5ACP98088 5654 aa1.13□□□□□ -2.23
SCN1A-214ENST00000637038 KRTAP6-1Q3LI64 71 aa1.12□□□□□ -2.23
SCN1A-214ENST00000637038 PRM1P04553 51 aa1.09□□□□□ -2.23
SCN1A-214ENST00000637038 KRTAP5-8O75690 187 aa1.09□□□□□ -2.24
SCN1A-214ENST00000637038 KRTAP6-2Q3LI66 62 aa1.04□□□□□ -2.24
SCN1A-214ENST00000637038 PHGR1C9JFL3 82 aa0.92□□□□□ -2.26
SCN1A-214ENST00000637038 LCE1CQ5T751 118 aa0.88□□□□□ -2.27
SCN1A-214ENST00000637038 KRTAP21-1Q3LI58 79 aa0.88□□□□□ -2.27
SCN1A-214ENST00000637038 LCE1BQ5T7P3 118 aa0.86□□□□□ -2.27
SCN1A-214ENST00000637038 KRTAP21-2Q3LI59 83 aa0.79□□□□□ -2.28
SCN1A-214ENST00000637038 MUC16Q8WXI7 14507 aa0.48□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 146.1 ms