RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 KRTAP10-7P60409 375 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-213ENST00000636759 KRTAP2-4Q9BYR9 128 aa2.45□□□□□ -2.02
SCN1A-213ENST00000636759 KRTAP2-1Q9BYU5 128 aa2.45□□□□□ -2.02
SCN1A-213ENST00000636759 KRTAP9-7A8MTY7 169 aa2.45□□□□□ -2.02
SCN1A-213ENST00000636759 KRTAP4-9Q9BYQ8 210 aa2.42□□□□□ -2.02
SCN1A-213ENST00000636759 USH2AO75445 5202 aa2.41□□□□□ -2.02
SCN1A-213ENST00000636759 SSPOA2VEC9 5147 aa2.4□□□□□ -2.03
SCN1A-213ENST00000636759 KMT2DO14686 5537 aa2.38□□□□□ -2.03
SCN1A-213ENST00000636759 KRTAP9-6A8MVA2 160 aa2.37□□□□□ -2.03
SCN1A-213ENST00000636759 KRTAP19-5Q3LI72 72 aa2.37□□□□□ -2.03
SCN1A-213ENST00000636759 KRTAP12-4P60329 112 aa2.36□□□□□ -2.03
SCN1A-213ENST00000636759 KRTAP4-11Q9BYQ6 195 aa2.35□□□□□ -2.03
SCN1A-213ENST00000636759 LCE5AQ5TCM9 118 aa2.35□□□□□ -2.03
SCN1A-213ENST00000636759 KRTAP4-2Q9BYR5 136 aa2.35□□□□□ -2.03
SCN1A-213ENST00000636759 CRCT1Q9UGL9 99 aa2.32□□□□□ -2.04
SCN1A-213ENST00000636759 KRTAP19-7Q3SYF9 63 aa2.29□□□□□ -2.04
SCN1A-213ENST00000636759 KRTAP19-6Q3LI70 58 aa2.28□□□□□ -2.04
SCN1A-213ENST00000636759 MT1LQ93083 61 aa2.18□□□□□ -2.06
SCN1A-213ENST00000636759 MT1EP04732 61 aa2.18□□□□□ -2.06
SCN1A-213ENST00000636759 KRTAP2-2Q9BYT5 123 aa2.16□□□□□ -2.06
SCN1A-213ENST00000636759 KRTAP6-3Q3LI67 103 aa2.13□□□□□ -2.07
SCN1A-213ENST00000636759 FCGBPQ9Y6R7 5405 aaPredicted RBP2.13□□□□□ -2.07
SCN1A-213ENST00000636759 PRM1P04553 51 aa2.13□□□□□ -2.07
SCN1A-213ENST00000636759 LCE1AQ5T7P2 110 aa2.13□□□□□ -2.07
SCN1A-213ENST00000636759 FSIP2Q5CZC0 6907 aa2.12□□□□□ -2.07
SCN1A-213ENST00000636759 KRTAP5-3Q6L8H2 238 aa2.1□□□□□ -2.07
SCN1A-213ENST00000636759 SYNE1Q8NF91 8797 aaKnown RBP2.09□□□□□ -2.08
SCN1A-213ENST00000636759 KRTAP4-3Q9BYR4 195 aa2.06□□□□□ -2.08
SCN1A-213ENST00000636759 MT1GP13640 62 aa2.05□□□□□ -2.08
SCN1A-213ENST00000636759 KRTAP19-3Q7Z4W3 81 aa2.05□□□□□ -2.08
SCN1A-213ENST00000636759 LCE3EQ5T5B0 92 aa2.04□□□□□ -2.08
SCN1A-213ENST00000636759 MUC12Q9UKN1 5478 aa2.04□□□□□ -2.08
SCN1A-213ENST00000636759 MT1MQ8N339 61 aa2.03□□□□□ -2.08
SCN1A-213ENST00000636759 LCE3DQ9BYE3 92 aa2.03□□□□□ -2.08
SCN1A-213ENST00000636759 MACF1Q9UPN3 7388 aaKnown RBP2.02□□□□□ -2.09
SCN1A-213ENST00000636759 LCE1EQ5T753 118 aa2.01□□□□□ -2.09
SCN1A-213ENST00000636759 NEBP20929 6669 aa2.01□□□□□ -2.09
SCN1A-213ENST00000636759 SYNE2Q8WXH0 6885 aaKnown RBP2□□□□□ -2.09
SCN1A-213ENST00000636759 KRTAP5-9P26371 169 aa1.99□□□□□ -2.09
SCN1A-213ENST00000636759 MT1AP04731 61 aa1.98□□□□□ -2.09
SCN1A-213ENST00000636759 SPRR2FQ96RM1 72 aa1.97□□□□□ -2.09
SCN1A-213ENST00000636759 KRTAP5-5Q701N2 237 aaPredicted RBP1.97□□□□□ -2.09
SCN1A-213ENST00000636759 OBSCNQ5VST9 7968 aa1.92□□□□□ -2.1
SCN1A-213ENST00000636759 MDN1Q9NU22 5596 aa1.91□□□□□ -2.1
SCN1A-213ENST00000636759 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
SCN1A-213ENST00000636759 KRTAP20-1Q3LI63 56 aa1.9□□□□□ -2.11
SCN1A-213ENST00000636759 DSTQ03001 7570 aaKnown RBP1.87□□□□□ -2.11
SCN1A-213ENST00000636759 KRTAP6-1Q3LI64 71 aa1.86□□□□□ -2.11
SCN1A-213ENST00000636759 LCE1FQ5T754 118 aa1.84□□□□□ -2.11
SCN1A-213ENST00000636759 SPRR2EP22531 72 aa1.84□□□□□ -2.12
SCN1A-213ENST00000636759 SPRR2BP35325 72 aa1.84□□□□□ -2.12
SCN1A-213ENST00000636759 SPRR2AP35326 72 aa1.84□□□□□ -2.12
SCN1A-213ENST00000636759 MT3P25713 68 aa1.79□□□□□ -2.12
SCN1A-213ENST00000636759 SPRR2DP22532 72 aa1.77□□□□□ -2.13
SCN1A-213ENST00000636759 KRTAP5-4Q6L8H1 288 aa1.71□□□□□ -2.14
SCN1A-213ENST00000636759 HMCN1Q96RW7 5635 aa1.69□□□□□ -2.14
SCN1A-213ENST00000636759 GPR98Q8WXG9 6306 aa1.67□□□□□ -2.14
SCN1A-213ENST00000636759 KRTAP5-10Q6L8G5 202 aa1.64□□□□□ -2.15
SCN1A-213ENST00000636759 KRTAP5-7Q6L8G8 165 aa1.6□□□□□ -2.15
SCN1A-213ENST00000636759 AHNAK2Q8IVF2 5795 aa1.6□□□□□ -2.15
SCN1A-213ENST00000636759 KRTAP5-2Q701N4 177 aa1.59□□□□□ -2.16
SCN1A-213ENST00000636759 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
SCN1A-213ENST00000636759 KRTAP20-2Q3LI61 65 aa1.56□□□□□ -2.16
SCN1A-213ENST00000636759 KRTAP5-11Q6L8G4 156 aa1.55□□□□□ -2.16
SCN1A-213ENST00000636759 MT4P47944 62 aa1.52□□□□□ -2.17
SCN1A-213ENST00000636759 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.5□□□□□ -2.17
SCN1A-213ENST00000636759 MUC5ACP98088 5654 aa1.45□□□□□ -2.18
SCN1A-213ENST00000636759 MUC5BQ9HC84 5762 aaPredicted RBP1.44□□□□□ -2.18
SCN1A-213ENST00000636759 AHNAKQ09666 5890 aaKnown RBP1.41□□□□□ -2.18
SCN1A-213ENST00000636759 KRTAP5-1Q6L8H4 278 aa1.4□□□□□ -2.19
SCN1A-213ENST00000636759 LCE1CQ5T751 118 aa1.35□□□□□ -2.19
SCN1A-213ENST00000636759 LCE1BQ5T7P3 118 aa1.35□□□□□ -2.19
SCN1A-213ENST00000636759 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
SCN1A-213ENST00000636759 KRTAP4-4Q9BYR3 166 aa1.29□□□□□ -2.2
SCN1A-213ENST00000636759 KRTAP5-8O75690 187 aa1.29□□□□□ -2.2
SCN1A-213ENST00000636759 KRTAP21-2Q3LI59 83 aa1.25□□□□□ -2.21
SCN1A-213ENST00000636759 PHGR1C9JFL3 82 aa0.99□□□□□ -2.25
SCN1A-213ENST00000636759 MUC16Q8WXI7 14507 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 135 ms