RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 KRTAP2-4Q9BYR9 128 aa1.52□□□□□ -2.17
SCN1A-210ENST00000635776 KRTAP2-1Q9BYU5 128 aa1.52□□□□□ -2.17
SCN1A-210ENST00000635776 MT1MQ8N339 61 aa1.5□□□□□ -2.17
SCN1A-210ENST00000635776 KRTAP9-6A8MVA2 160 aa1.46□□□□□ -2.18
SCN1A-210ENST00000635776 LCE1AQ5T7P2 110 aa1.46□□□□□ -2.18
SCN1A-210ENST00000635776 LCE5AQ5TCM9 118 aa1.44□□□□□ -2.18
SCN1A-210ENST00000635776 KRTAP4-7Q9BYR0 210 aa1.43□□□□□ -2.18
SCN1A-210ENST00000635776 FSIP2Q5CZC0 6907 aa1.43□□□□□ -2.18
SCN1A-210ENST00000635776 SPRR2EP22531 72 aa1.43□□□□□ -2.18
SCN1A-210ENST00000635776 SPRR2BP35325 72 aa1.43□□□□□ -2.18
SCN1A-210ENST00000635776 SPRR2AP35326 72 aa1.43□□□□□ -2.18
SCN1A-210ENST00000635776 KRTAP9-2Q9BYQ4 174 aa1.42□□□□□ -2.18
SCN1A-210ENST00000635776 FCGBPQ9Y6R7 5405 aaPredicted RBP1.41□□□□□ -2.18
SCN1A-210ENST00000635776 MACF1Q9UPN3 7388 aaKnown RBP1.41□□□□□ -2.18
SCN1A-210ENST00000635776 MT1AP04731 61 aa1.41□□□□□ -2.18
SCN1A-210ENST00000635776 KRTAP5-9P26371 169 aa1.4□□□□□ -2.19
SCN1A-210ENST00000635776 KMT2DO14686 5537 aa1.39□□□□□ -2.19
SCN1A-210ENST00000635776 KRTAP6-3Q3LI67 103 aa1.39□□□□□ -2.19
SCN1A-210ENST00000635776 SPRR2DP22532 72 aa1.39□□□□□ -2.19
SCN1A-210ENST00000635776 LOC100996750A0A140TA64 210 aa1.38□□□□□ -2.19
SCN1A-210ENST00000635776 KRTAP4-6Q9BYQ5 205 aa1.38□□□□□ -2.19
SCN1A-210ENST00000635776 KRTAP12-4P60329 112 aa1.37□□□□□ -2.19
SCN1A-210ENST00000635776 LCE3DQ9BYE3 92 aa1.36□□□□□ -2.19
SCN1A-210ENST00000635776 LCE3EQ5T5B0 92 aa1.36□□□□□ -2.19
SCN1A-210ENST00000635776 KRTAP4-3Q9BYR4 195 aa1.35□□□□□ -2.19
SCN1A-210ENST00000635776 SYNE2Q8WXH0 6885 aaKnown RBP1.35□□□□□ -2.19
SCN1A-210ENST00000635776 LCE3BQ5TA77 95 aa1.34□□□□□ -2.19
SCN1A-210ENST00000635776 NEBP20929 6669 aa1.34□□□□□ -2.2
SCN1A-210ENST00000635776 MDN1Q9NU22 5596 aa1.33□□□□□ -2.2
SCN1A-210ENST00000635776 OBSCNQ5VST9 7968 aa1.32□□□□□ -2.2
SCN1A-210ENST00000635776 SYNE1Q8NF91 8797 aaKnown RBP1.32□□□□□ -2.2
SCN1A-210ENST00000635776 KRTAP9-6A0A140TA67 174 aa1.31□□□□□ -2.2
SCN1A-210ENST00000635776 KRTAP9-4Q9BYQ2 154 aa1.3□□□□□ -2.2
SCN1A-210ENST00000635776 MUC12Q9UKN1 5478 aa1.29□□□□□ -2.2
SCN1A-210ENST00000635776 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.29□□□□□ -2.2
SCN1A-210ENST00000635776 KRTAP6-1Q3LI64 71 aa1.28□□□□□ -2.2
SCN1A-210ENST00000635776 LCE4AQ5TA78 99 aa1.27□□□□□ -2.21
SCN1A-210ENST00000635776 DSTQ03001 7570 aaKnown RBP1.26□□□□□ -2.21
SCN1A-210ENST00000635776 KRTAP5-5Q701N2 237 aaPredicted RBP1.25□□□□□ -2.21
SCN1A-210ENST00000635776 PRM1P04553 51 aa1.22□□□□□ -2.21
SCN1A-210ENST00000635776 KRTAP9-7A8MTY7 169 aa1.22□□□□□ -2.21
SCN1A-210ENST00000635776 KRTAP2-2Q9BYT5 123 aa1.2□□□□□ -2.22
SCN1A-210ENST00000635776 KRTAP6-2Q3LI66 62 aa1.19□□□□□ -2.22
SCN1A-210ENST00000635776 KRTAP5-4Q6L8H1 288 aa1.17□□□□□ -2.22
SCN1A-210ENST00000635776 KRTAP4-9Q9BYQ8 210 aa1.16□□□□□ -2.22
SCN1A-210ENST00000635776 KRTAP20-1Q3LI63 56 aa1.16□□□□□ -2.22
SCN1A-210ENST00000635776 KRTAP9-9Q9BYP9 154 aa1.15□□□□□ -2.23
SCN1A-210ENST00000635776 MT4P47944 62 aa1.14□□□□□ -2.23
SCN1A-210ENST00000635776 KRTAP20-2Q3LI61 65 aa1.12□□□□□ -2.23
SCN1A-210ENST00000635776 KRTAP4-12Q9BQ66 201 aa1.12□□□□□ -2.23
SCN1A-210ENST00000635776 KRTAP4-2Q9BYR5 136 aa1.11□□□□□ -2.23
SCN1A-210ENST00000635776 LCE1EQ5T753 118 aa1.09□□□□□ -2.23
SCN1A-210ENST00000635776 KRTAP5-3Q6L8H2 238 aa1.09□□□□□ -2.24
SCN1A-210ENST00000635776 HMCN1Q96RW7 5635 aa1.08□□□□□ -2.24
SCN1A-210ENST00000635776 KRTAP5-2Q701N4 177 aa1.07□□□□□ -2.24
SCN1A-210ENST00000635776 LCE1DQ5T752 114 aa1.06□□□□□ -2.24
SCN1A-210ENST00000635776 LCE1BQ5T7P3 118 aa1.05□□□□□ -2.24
SCN1A-210ENST00000635776 MUC5BQ9HC84 5762 aaPredicted RBP1.01□□□□□ -2.25
SCN1A-210ENST00000635776 GPR98Q8WXG9 6306 aa1□□□□□ -2.25
SCN1A-210ENST00000635776 KRTAP4-11Q9BYQ6 195 aa1□□□□□ -2.25
SCN1A-210ENST00000635776 LCE1CQ5T751 118 aa0.98□□□□□ -2.25
SCN1A-210ENST00000635776 LCE1FQ5T754 118 aa0.98□□□□□ -2.25
SCN1A-210ENST00000635776 AHNAK2Q8IVF2 5795 aa0.97□□□□□ -2.25
SCN1A-210ENST00000635776 MUC5ACP98088 5654 aa0.97□□□□□ -2.25
SCN1A-210ENST00000635776 KRTAP5-8O75690 187 aa0.94□□□□□ -2.26
SCN1A-210ENST00000635776 KRTAP5-10Q6L8G5 202 aa0.93□□□□□ -2.26
SCN1A-210ENST00000635776 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.91□□□□□ -2.26
SCN1A-210ENST00000635776 MUC19Q7Z5P9 8384 aa0.89□□□□□ -2.27
SCN1A-210ENST00000635776 KRTAP5-7Q6L8G8 165 aa0.89□□□□□ -2.27
SCN1A-210ENST00000635776 KRTAP5-1Q6L8H4 278 aa0.88□□□□□ -2.27
SCN1A-210ENST00000635776 AHNAKQ09666 5890 aaKnown RBP0.88□□□□□ -2.27
SCN1A-210ENST00000635776 KRTAP5-11Q6L8G4 156 aa0.85□□□□□ -2.27
SCN1A-210ENST00000635776 KRTAP21-2Q3LI59 83 aa0.81□□□□□ -2.28
SCN1A-210ENST00000635776 KRTAP21-1Q3LI58 79 aa0.78□□□□□ -2.29
SCN1A-210ENST00000635776 KRTAP4-4Q9BYR3 166 aa0.77□□□□□ -2.29
SCN1A-210ENST00000635776 PHGR1C9JFL3 82 aa0.69□□□□□ -2.3
SCN1A-210ENST00000635776 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 131 ms