RNA–Protein interactions for RNA: ENST00000634433.1

BRCA1-230, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-230ENST00000634433 KRTAP19-4Q3LI73 84 aa2.98□□□□□ -1.93
BRCA1-230ENST00000634433 KRTAP5-3Q6L8H2 238 aa2.96□□□□□ -1.93
BRCA1-230ENST00000634433 MT1BP07438 61 aa2.96□□□□□ -1.94
BRCA1-230ENST00000634433 KRTAP19-6Q3LI70 58 aa2.96□□□□□ -1.94
BRCA1-230ENST00000634433 USH2AO75445 5202 aa2.95□□□□□ -1.94
BRCA1-230ENST00000634433 FCGBPQ9Y6R7 5405 aaPredicted RBP2.95□□□□□ -1.94
BRCA1-230ENST00000634433 KRTAP20-1Q3LI63 56 aa2.91□□□□□ -1.94
BRCA1-230ENST00000634433 KRTAP10-5P60370 271 aa2.9□□□□□ -1.95
BRCA1-230ENST00000634433 MT1XP80297 61 aa2.9□□□□□ -1.95
BRCA1-230ENST00000634433 LCE3CQ5T5A8 94 aa2.89□□□□□ -1.95
BRCA1-230ENST00000634433 LCE3AQ5TA76 89 aa2.84□□□□□ -1.95
BRCA1-230ENST00000634433 LCE1EQ5T753 118 aa2.83□□□□□ -1.96
BRCA1-230ENST00000634433 NEBP20929 6669 aa2.83□□□□□ -1.96
BRCA1-230ENST00000634433 KRTAP10-12P60413 245 aa2.82□□□□□ -1.96
BRCA1-230ENST00000634433 LCE1AQ5T7P2 110 aa2.81□□□□□ -1.96
BRCA1-230ENST00000634433 KRTAP8-1Q8IUC2 63 aa2.81□□□□□ -1.96
BRCA1-230ENST00000634433 MACF1Q9UPN3 7388 aaKnown RBP2.79□□□□□ -1.96
BRCA1-230ENST00000634433 KRTAP2-3P0C7H8 128 aa2.79□□□□□ -1.96
BRCA1-230ENST00000634433 KRTAP2-4Q9BYR9 128 aa2.79□□□□□ -1.96
BRCA1-230ENST00000634433 HMCN1Q96RW7 5635 aa2.79□□□□□ -1.96
BRCA1-230ENST00000634433 KRTAP10-7P60409 375 aaPredicted RBP2.78□□□□□ -1.96
BRCA1-230ENST00000634433 KRTAP5-9P26371 169 aa2.75□□□□□ -1.97
BRCA1-230ENST00000634433 KRTAP12-3P60328 96 aa2.75□□□□□ -1.97
BRCA1-230ENST00000634433 SYNE2Q8WXH0 6885 aaKnown RBP2.73□□□□□ -1.97
BRCA1-230ENST00000634433 SPRR5A0A1B0GTR4 108 aa2.71□□□□□ -1.98
BRCA1-230ENST00000634433 LCE3EQ5T5B0 92 aa2.71□□□□□ -1.98
BRCA1-230ENST00000634433 KRTAP2-1Q9BYU5 128 aa2.67□□□□□ -1.98
BRCA1-230ENST00000634433 KRTAP19-5Q3LI72 72 aa2.66□□□□□ -1.98
BRCA1-230ENST00000634433 MUC12Q9UKN1 5478 aa2.59□□□□□ -2
BRCA1-230ENST00000634433 KRTAP19-7Q3SYF9 63 aa2.58□□□□□ -2
BRCA1-230ENST00000634433 KMT2DO14686 5537 aa2.57□□□□□ -2
BRCA1-230ENST00000634433 SPRR2EP22531 72 aa2.57□□□□□ -2
BRCA1-230ENST00000634433 SPRR2BP35325 72 aa2.57□□□□□ -2
BRCA1-230ENST00000634433 SPRR2AP35326 72 aa2.57□□□□□ -2
BRCA1-230ENST00000634433 MT1EP04732 61 aa2.54□□□□□ -2
BRCA1-230ENST00000634433 MDN1Q9NU22 5596 aa2.53□□□□□ -2
BRCA1-230ENST00000634433 MT3P25713 68 aa2.52□□□□□ -2.01
BRCA1-230ENST00000634433 MT1LQ93083 61 aa2.51□□□□□ -2.01
BRCA1-230ENST00000634433 LCE3DQ9BYE3 92 aa2.5□□□□□ -2.01
BRCA1-230ENST00000634433 SPRR2DP22532 72 aa2.5□□□□□ -2.01
BRCA1-230ENST00000634433 SPRR2FQ96RM1 72 aa2.5□□□□□ -2.01
BRCA1-230ENST00000634433 GPR98Q8WXG9 6306 aa2.5□□□□□ -2.01
BRCA1-230ENST00000634433 MT1GP13640 62 aa2.43□□□□□ -2.02
BRCA1-230ENST00000634433 KRTAP19-3Q7Z4W3 81 aa2.42□□□□□ -2.02
BRCA1-230ENST00000634433 KRTAP12-4P60329 112 aa2.4□□□□□ -2.03
BRCA1-230ENST00000634433 KRTAP9-6A8MVA2 160 aa2.39□□□□□ -2.03
BRCA1-230ENST00000634433 MT1MQ8N339 61 aa2.38□□□□□ -2.03
BRCA1-230ENST00000634433 KRTAP4-3Q9BYR4 195 aa2.31□□□□□ -2.04
BRCA1-230ENST00000634433 KRTAP5-7Q6L8G8 165 aa2.29□□□□□ -2.04
BRCA1-230ENST00000634433 KRTAP5-10Q6L8G5 202 aa2.27□□□□□ -2.05
BRCA1-230ENST00000634433 AHNAK2Q8IVF2 5795 aa2.25□□□□□ -2.05
BRCA1-230ENST00000634433 MUC5BQ9HC84 5762 aaPredicted RBP2.2□□□□□ -2.06
BRCA1-230ENST00000634433 KRTAP5-4Q6L8H1 288 aa2.15□□□□□ -2.07
BRCA1-230ENST00000634433 MT1AP04731 61 aa2.14□□□□□ -2.07
BRCA1-230ENST00000634433 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.14□□□□□ -2.07
BRCA1-230ENST00000634433 MT4P47944 62 aa2.13□□□□□ -2.07
BRCA1-230ENST00000634433 KRTAP5-5Q701N2 237 aaPredicted RBP2.12□□□□□ -2.07
BRCA1-230ENST00000634433 DSTQ03001 7570 aaKnown RBP2.12□□□□□ -2.07
BRCA1-230ENST00000634433 KRTAP6-1Q3LI64 71 aa2.1□□□□□ -2.07
BRCA1-230ENST00000634433 AHNAKQ09666 5890 aaKnown RBP2.04□□□□□ -2.08
BRCA1-230ENST00000634433 KRTAP5-11Q6L8G4 156 aa2.03□□□□□ -2.08
BRCA1-230ENST00000634433 KRTAP20-2Q3LI61 65 aa2□□□□□ -2.09
BRCA1-230ENST00000634433 SYNE1Q8NF91 8797 aaKnown RBP2□□□□□ -2.09
BRCA1-230ENST00000634433 KRTAP6-2Q3LI66 62 aa1.92□□□□□ -2.1
BRCA1-230ENST00000634433 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
BRCA1-230ENST00000634433 MUC5ACP98088 5654 aa1.87□□□□□ -2.11
BRCA1-230ENST00000634433 KRTAP5-1Q6L8H4 278 aa1.85□□□□□ -2.11
BRCA1-230ENST00000634433 KRTAP5-8O75690 187 aa1.84□□□□□ -2.12
BRCA1-230ENST00000634433 KRTAP5-2Q701N4 177 aa1.84□□□□□ -2.12
BRCA1-230ENST00000634433 KRTAP4-4Q9BYR3 166 aa1.8□□□□□ -2.12
BRCA1-230ENST00000634433 LCE1CQ5T751 118 aa1.79□□□□□ -2.12
BRCA1-230ENST00000634433 LCE1BQ5T7P3 118 aa1.79□□□□□ -2.12
BRCA1-230ENST00000634433 PRM1P04553 51 aa1.77□□□□□ -2.13
BRCA1-230ENST00000634433 OBSCNQ5VST9 7968 aa1.7□□□□□ -2.14
BRCA1-230ENST00000634433 KRTAP21-2Q3LI59 83 aa1.37□□□□□ -2.19
BRCA1-230ENST00000634433 PHGR1C9JFL3 82 aa1.31□□□□□ -2.2
BRCA1-230ENST00000634433 KRTAP21-1Q3LI58 79 aa1.21□□□□□ -2.22
BRCA1-230ENST00000634433 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 5.9 ms